Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG452_RS24475 Genome accession   NZ_CP108569
Coordinates   5351186..5353171 (-) Length   661 a.a.
NCBI ID   WP_327297718.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01197     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5346186..5358171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG452_RS24460 (OG452_24445) - 5346461..5347723 (+) 1263 WP_327297715.1 FAD-dependent oxidoreductase -
  OG452_RS24465 (OG452_24450) dnaG 5347794..5349695 (+) 1902 WP_327297716.1 DNA primase -
  OG452_RS24470 (OG452_24455) - 5349838..5351070 (+) 1233 WP_327297717.1 sigma-70 family RNA polymerase sigma factor -
  OG452_RS24475 (OG452_24460) rcrQ 5351186..5353171 (-) 1986 WP_327297718.1 ABC transporter ATP-binding protein Regulator
  OG452_RS24480 (OG452_24465) rcrP 5353171..5354904 (-) 1734 WP_327297719.1 ABC transporter ATP-binding protein Regulator
  OG452_RS24485 (OG452_24470) - 5355046..5356527 (-) 1482 WP_327297720.1 FGGY family carbohydrate kinase -
  OG452_RS24490 (OG452_24475) - 5356558..5356857 (-) 300 WP_327297721.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70973.57 Da        Isoelectric Point: 5.5647

>NTDB_id=663232 OG452_RS24475 WP_327297718.1 5351186..5353171(-) (rcrQ) [Streptomyces sp. NBC_01197]
MSGPGGRMMAGPTQKSMDFKGSGKRLLRQLAQDRAALFTMLLAVVGSVALSVVGPKILGRATDLIFAGIIGRHLPAGTTK
AQALKGLHARGQGAMADMLSGVDFTPGKGIDFTQVGEILLLALAAFGCAGLLMLVTTRLAARIINEAMYRMREEIQAKLS
RLPLSYFDRAKRGEVLSRTTNDVDNIGQTMQQTMGQLMNSLLTIIGVLAMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKIFGRQAESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVAVI
GGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQTPDADSSGTESDSVSGPVSDAV
PGARTADRPVAVRGSISLEKVAFRYEADKPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGTDI
AGMTREELRSGIGMVLQDTWLFGGTIAENIAYGSSRAVTREEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQ
LITIARAFLSDPVILVLDEATSSVDTRTEVLIQQAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGSHEELLA
ADGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=663232 OG452_RS24475 WP_327297718.1 5351186..5353171(-) (rcrQ) [Streptomyces sp. NBC_01197]
ATGTCCGGTCCTGGTGGACGCATGATGGCAGGACCGACCCAGAAGTCCATGGACTTCAAGGGGTCGGGCAAGCGGCTGCT
GCGGCAGCTGGCGCAGGACCGTGCCGCGCTGTTCACGATGCTGCTGGCCGTCGTCGGCAGCGTCGCGCTCTCGGTCGTCG
GACCGAAGATCCTCGGCCGGGCGACCGACTTGATCTTCGCCGGGATCATCGGCCGCCATCTGCCCGCGGGCACGACCAAG
GCGCAGGCTCTGAAGGGCCTGCACGCCAGGGGCCAGGGCGCGATGGCCGACATGCTCTCCGGTGTGGACTTCACGCCGGG
CAAGGGCATCGACTTCACCCAGGTGGGAGAGATCCTGCTGCTCGCGCTGGCGGCCTTCGGCTGCGCGGGTCTGCTGATGC
TCGTCACCACCCGGCTCGCGGCCCGGATCATCAACGAGGCCATGTACCGGATGCGTGAGGAGATCCAGGCGAAGCTCTCG
CGCCTGCCGCTGTCGTACTTCGACAGGGCGAAGCGCGGTGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACGATGCAGCAGACCATGGGCCAGCTCATGAACTCGCTGCTCACCATCATCGGCGTACTGGCGATGATGTTCTGGA
TCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTCTCGGTGCTGGTGGCCACGCGCGTCGGCAAGCGGTCC
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACGCCCT
GGTCAAGATCTTCGGACGGCAGGCGGAGTCGGCCGAGGCCTTCCGCGAGCAGAACGACGCGCTGTACGAGGCGGGGTTCA
AGGCCCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACATCAACTACGTGCTTGTGGCAGTCATC
GGCGGGCTGCGGGTCGCTTCCGGGTCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACCCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCGTCCGCCGAGCGGATCTTCGAACTGCTCG
ACGCGGAGGAGCAGACGCCCGACGCCGACTCCTCCGGCACGGAATCCGACTCCGTGTCCGGCCCGGTGTCCGACGCGGTA
CCCGGTGCCCGTACCGCCGACCGTCCGGTGGCGGTGCGCGGCAGCATCTCGCTGGAGAAGGTCGCCTTCCGGTACGAGGC
GGACAAACCGCTCATCGAAAATCTGTCCCTCTCGGTCGAACCGGGGCACACGGTCGCGATCGTCGGTCCGACCGGCGCGG
GCAAGACGACACTGGTCAATCTGCTCATGCGGTTCTACGAGGTGACCGGCGGGCGGATCACGCTCGACGGGACCGACATC
GCCGGCATGACGCGGGAGGAACTGCGCTCCGGGATAGGCATGGTCCTCCAGGACACCTGGTTGTTCGGCGGCACGATCGC
GGAGAACATCGCGTACGGCTCGTCGCGCGCCGTCACCCGCGAGGAGATCGAGGAGGCGGCCCGGGCTGCCCACGCCGACC
GGTTCATCCGCACCCTTCCCGAGGGGTACGACACGGTCATCGACGACGAGGGTACGGGGGTGAGCGCGGGAGAGAAGCAG
CTGATCACGATCGCGCGGGCCTTCCTCTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACGAGCTCCGTCGACACCCG
TACCGAGGTGCTGATCCAGCAGGCGATGGCGCGTCTGGCGCACGGCCGCACCAGCTTCGTCATCGCACACCGGCTCTCCA
CGATCCGGGACGCGGACGTGATTCTGGTGATGGAGAACGGGTCGATCGTGGAGCAGGGGTCGCACGAGGAGTTGCTGGCT
GCGGACGGGGCGTATGCGCGGCTTTACGCGGCGCAGTTCGCGCAGGCGGTCGTGGAGGTGGATTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-349)

ABC transporter (ABC_tran)

(433-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.813

97.277

0.387