Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG702_RS25385 Genome accession   NZ_CP108568
Coordinates   5708075..5709811 (-) Length   578 a.a.
NCBI ID   WP_327291248.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01198     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5703075..5714811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG702_RS25360 (OG702_25390) - 5703295..5703513 (-) 219 WP_327291244.1 DUF397 domain-containing protein -
  OG702_RS25365 (OG702_25395) - 5703510..5704334 (-) 825 WP_327291245.1 helix-turn-helix transcriptional regulator -
  OG702_RS25370 (OG702_25400) - 5704464..5704886 (+) 423 WP_327291246.1 ATP-binding protein -
  OG702_RS25375 (OG702_25405) - 5704895..5705854 (-) 960 WP_327291247.1 DUF3048 domain-containing protein -
  OG702_RS25380 (OG702_25410) rcrQ 5706009..5707925 (-) 1917 WP_327293367.1 ABC transporter ATP-binding protein Regulator
  OG702_RS25385 (OG702_25415) rcrP 5708075..5709811 (-) 1737 WP_327291248.1 ABC transporter ATP-binding protein Regulator
  OG702_RS25390 (OG702_25420) - 5710070..5711587 (-) 1518 WP_327291250.1 FGGY family carbohydrate kinase -
  OG702_RS25395 (OG702_25425) - 5711669..5711965 (-) 297 WP_327291251.1 YtxH domain-containing protein -
  OG702_RS25415 (OG702_25445) - 5712743..5714173 (-) 1431 Protein_5016 site-specific integrase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62484.77 Da        Isoelectric Point: 6.9711

>NTDB_id=663162 OG702_RS25385 WP_327291248.1 5708075..5709811(-) (rcrP) [Streptomyces sp. NBC_01198]
MLIRLLRSHLGPYKRPISALVALQLVQTIAALFLPTLNADIIDNGVVKGDSGYILGMGATMIGVTVVQVVCAIGAVYYGA
RTAMAVGRDIRRSVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCFGGIVMALGQDVPLSSL
LLAVVPVLAVAVSLIIRRLRPLFRTMQKRVDTVNRVLREQITGIRVIRAFVKDDYEKQRFGKANDEVTEVSLATGRLLAL
MFPTVMAIVNISSVAVLWFGAHRIDSGGMQIGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIEEVLNTASSVVP
PRAPITTLRRHGELELFNVDFAYPGAEAAVLRGVDLMARPGETTAVIGSTGSGKSTLLGLIPRLYDATGGRVLVDGEDVA
ELDPALLARTVGLVPQKPYLFSGTVASNLRYGKPDATDDELWHALEVAQARDFVERLEGGLDAPIAQGGSNVSGGQRQRL
AIARALVRRPEIYLFDDSFSALDYATDAALRRALAAETAQATVVIVAQRVSTIREADRIVVLDEGRVVGTGTHAELMAGN
ETYREIVLSQLTEQEAAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=663162 OG702_RS25385 WP_327291248.1 5708075..5709811(-) (rcrP) [Streptomyces sp. NBC_01198]
GTGCTGATCCGTCTCCTGCGCTCCCACCTGGGACCGTACAAGCGCCCCATCAGCGCGCTGGTCGCGCTGCAGCTCGTCCA
GACCATCGCGGCCCTCTTCCTGCCCACCCTCAACGCCGACATCATCGACAACGGCGTGGTCAAGGGTGACTCCGGCTACA
TCCTGGGCATGGGCGCCACCATGATCGGCGTCACCGTCGTGCAGGTGGTGTGCGCGATCGGCGCCGTCTATTACGGCGCC
CGCACCGCCATGGCCGTCGGCCGGGACATACGCCGGTCGGTCTTCGACCGGGTGCAGAGCTTCTCGGCGCGCGAGGTCGG
TCAGTTCGGCGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGCTTCGGCGGCATCGTCATGGCGCTCGGCCAGGACGTGCCGCTGTCGTCGCTG
CTGCTGGCCGTGGTGCCGGTGCTCGCCGTCGCCGTCAGCCTGATCATCCGCCGGCTGCGCCCGCTGTTCCGCACCATGCA
GAAGCGCGTCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGTATCCGGGTGATCAGGGCCTTCGTCAAGGACG
ACTACGAGAAGCAGCGCTTCGGCAAGGCCAACGACGAGGTCACCGAGGTCTCGCTGGCCACCGGCCGGCTGCTGGCGCTG
ATGTTCCCCACCGTGATGGCGATCGTGAACATCTCCAGCGTGGCCGTGCTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGCATGCAGATCGGCGCGCTGACCGCCTTCCTGAGCTATCTGATGCAGATCCTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTGAACACCGCCTCCAGCGTCGTTCCG
CCCAGGGCGCCGATCACCACCCTGCGCCGGCACGGCGAGCTGGAGCTGTTCAACGTCGACTTCGCCTACCCCGGCGCCGA
GGCCGCGGTGCTGCGGGGCGTGGACCTGATGGCCAGGCCGGGTGAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGGCTGATCCCGCGGCTGTACGACGCCACCGGCGGCCGGGTGCTGGTCGACGGCGAGGACGTGGCG
GAGCTCGACCCGGCGCTGCTGGCCAGAACGGTCGGGCTGGTGCCGCAGAAGCCGTATCTCTTCTCCGGCACGGTGGCCTC
CAACCTGCGCTACGGCAAACCGGACGCGACCGACGACGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGATTTCG
TGGAGCGGCTCGAGGGTGGCCTGGACGCCCCGATCGCGCAGGGCGGCAGCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCCATCGCGCGGGCGCTGGTGCGGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCCACGGA
CGCGGCGCTGCGGCGCGCGCTGGCGGCGGAGACCGCGCAGGCGACGGTGGTGATCGTGGCCCAGCGGGTGTCCACCATCC
GCGAGGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCACGCACGCCGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGTTGTCCCAGCTGACCGAGCAGGAGGCCGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.959

93.772

0.384