Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG702_RS25380 Genome accession   NZ_CP108568
Coordinates   5706009..5707925 (-) Length   638 a.a.
NCBI ID   WP_327293367.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01198     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5701009..5712925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG702_RS25350 (OG702_25380) - 5702142..5702702 (-) 561 WP_327291242.1 isochorismatase family cysteine hydrolase -
  OG702_RS25355 (OG702_25385) - 5702788..5703240 (-) 453 WP_327291243.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG702_RS25360 (OG702_25390) - 5703295..5703513 (-) 219 WP_327291244.1 DUF397 domain-containing protein -
  OG702_RS25365 (OG702_25395) - 5703510..5704334 (-) 825 WP_327291245.1 helix-turn-helix transcriptional regulator -
  OG702_RS25370 (OG702_25400) - 5704464..5704886 (+) 423 WP_327291246.1 ATP-binding protein -
  OG702_RS25375 (OG702_25405) - 5704895..5705854 (-) 960 WP_327291247.1 DUF3048 domain-containing protein -
  OG702_RS25380 (OG702_25410) rcrQ 5706009..5707925 (-) 1917 WP_327293367.1 ABC transporter ATP-binding protein Regulator
  OG702_RS25385 (OG702_25415) rcrP 5708075..5709811 (-) 1737 WP_327291248.1 ABC transporter ATP-binding protein Regulator
  OG702_RS25390 (OG702_25420) - 5710070..5711587 (-) 1518 WP_327291250.1 FGGY family carbohydrate kinase -
  OG702_RS25395 (OG702_25425) - 5711669..5711965 (-) 297 WP_327291251.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 68827.10 Da        Isoelectric Point: 5.2689

>NTDB_id=663161 OG702_RS25380 WP_327293367.1 5706009..5707925(-) (rcrQ) [Streptomyces sp. NBC_01198]
MGGPGRFMSGGPIERSMDFKNSFKRLIGLMRPDRLLLYVVLAVGTVSVALAVTGPRILGHATDLIFAGVIGRQLSGTTKD
QALDSLRAHGKGGVADMLSGIDFTPGKGMDFHAIGGVLLLALGVYVVASLFSVVQMRVAIIVINRTVYRLRRDVEAKLSR
LPLRYFDQQPRGEVLSRATNDIDNIGQTMQQTMGQLINSLLTIVGVLAMMFWISWLLALVALITVPVTLLVATRVGKRAQ
PQFVQQWKTTGKLNAHIEEMYTGHSLVKVFGRAEESAEAFRLENEALYDTGFKAQFISGTIQPMMMFIGNLNYVLVAVVG
GLRVASGALSIGDVQAFVQYSRQFSQPLTQVASMANLIQSGVASAERVFELLDAEEQSQDPKAPARPAELTGRVALEDVS
FRYDPDTPLIDGLSLAVQPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGTDVAAMSREELRSSIGMVLQDTWLF
GGTIAENIGYGTEDATREDIEAAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEATSS
VDTRTEVLIQRAMAQLSHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHDELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=663161 OG702_RS25380 WP_327293367.1 5706009..5707925(-) (rcrQ) [Streptomyces sp. NBC_01198]
ATGGGCGGCCCCGGCCGCTTCATGAGCGGCGGCCCGATCGAGCGCTCGATGGACTTCAAGAACTCCTTCAAGCGGCTGAT
CGGCCTGATGCGCCCCGACCGCCTCCTGCTCTACGTCGTCCTCGCCGTCGGCACGGTCAGCGTCGCGCTCGCCGTCACCG
GCCCGCGCATCCTCGGCCACGCCACCGACCTGATCTTCGCCGGGGTGATCGGCCGCCAGCTGTCGGGGACCACGAAGGAC
CAGGCGCTCGACTCGCTGCGGGCGCACGGCAAGGGCGGGGTGGCCGACATGCTGTCGGGCATCGACTTCACCCCCGGCAA
GGGCATGGACTTCCACGCGATCGGCGGCGTCCTGCTGCTGGCGCTCGGGGTGTACGTGGTGGCGTCGCTCTTCAGCGTCG
TCCAGATGCGGGTCGCGATCATCGTCATCAACCGGACGGTCTACCGGCTGCGCAGGGATGTCGAGGCGAAGCTGTCCCGA
CTGCCGCTGCGGTACTTCGACCAGCAGCCGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACATCGGCCA
GACCATGCAGCAGACCATGGGCCAGCTGATCAACTCGCTGCTGACCATCGTCGGCGTGCTGGCGATGATGTTCTGGATCT
CCTGGCTGCTGGCCCTGGTGGCCCTGATCACCGTGCCGGTGACGCTGCTGGTGGCCACCCGGGTCGGCAAGCGGGCGCAG
CCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCACTCCCTGGT
CAAGGTCTTCGGCCGCGCCGAGGAGTCCGCGGAGGCCTTCCGGCTGGAGAACGAGGCGCTCTACGACACCGGCTTCAAGG
CGCAGTTCATCTCCGGCACCATCCAGCCGATGATGATGTTCATCGGCAACCTGAACTACGTCCTGGTCGCCGTCGTCGGC
GGTCTGCGGGTCGCGTCGGGCGCGCTGTCCATCGGCGACGTGCAGGCCTTCGTGCAGTATTCGCGGCAGTTCAGCCAGCC
GCTGACCCAGGTCGCGAGCATGGCGAATCTGATCCAGTCCGGGGTCGCCTCGGCGGAGCGGGTCTTCGAGCTCCTCGACG
CCGAGGAGCAGTCGCAGGACCCGAAGGCCCCGGCCCGCCCCGCCGAGCTGACCGGGCGGGTGGCGCTGGAGGACGTCTCC
TTCCGCTACGACCCGGACACCCCGCTGATCGACGGCCTGTCCCTGGCCGTGCAGCCCGGCCAGACGGTGGCCATCGTCGG
CCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGCTTCTACGAGGTCTCCGGCGGCCGGATCACGCTGG
ACGGCACCGACGTCGCGGCGATGTCCCGGGAGGAGCTGCGCTCCTCGATCGGCATGGTGCTCCAGGACACCTGGCTCTTC
GGCGGCACGATCGCCGAGAACATCGGCTACGGCACCGAGGACGCCACCCGCGAGGACATCGAGGCGGCCGCCAGGGCCGC
GCACGCCGACCGCTTCATCCGCACCCTCCCCGACGGCTACGACACCGTCATCGACGACGAGGGCACCGGCGTGAGCGCGG
GCGAGAAGCAGCTGATCACCATCGCCAGGGCCTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAGGCGACCAGCTCG
GTGGACACCCGCACCGAGGTCCTCATCCAGCGTGCCATGGCCCAACTCAGCCACGGCAGGACGAGCTTCGTGATCGCCCA
CCGGCTGTCCACGATCCGTGACGCCGACGTCATCCTGGTCATGGAGTCCGGCTCGATAGTCGAACAGGGCACCCACGACG
AACTCCTCGCCTCGGGCGGCGCGTACGCCCGCCTCTACGCGGCCCAGTTCGCCCAGGCGGTGGCCGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-348)

ABC transporter (ABC_tran)

(411-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.023

82.602

0.364