Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MN093_RS17590 Genome accession   NZ_CP093291
Coordinates   3373598..3374200 (-) Length   200 a.a.
NCBI ID   WP_105583987.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3368598..3379200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN093_RS17570 (MN093_17570) dnaD 3368886..3369593 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  MN093_RS17575 (MN093_17575) nth 3369609..3370256 (+) 648 WP_000933020.1 endonuclease III -
  MN093_RS17580 (MN093_17580) - 3370260..3370778 (+) 519 WP_131245987.1 YpoC family protein -
  MN093_RS17585 (MN093_17585) - 3370805..3373531 (-) 2727 WP_241875516.1 penicillin-binding protein 1A -
  MN093_RS17590 (MN093_17590) recU 3373598..3374200 (-) 603 WP_105583987.1 Holliday junction resolvase RecU Machinery gene
  MN093_RS17595 (MN093_17595) - 3374304..3375329 (+) 1026 WP_131245985.1 DUF2515 domain-containing protein -
  MN093_RS28515 - 3375673..3375819 (-) 147 WP_307838389.1 phage portal protein -
  MN093_RS17600 (MN093_17600) - 3375938..3376180 (+) 243 WP_002011865.1 hypothetical protein -
  MN093_RS17605 (MN093_17605) - 3376196..3376540 (+) 345 WP_002011864.1 YppE family protein -
  MN093_RS17610 (MN093_17610) - 3376719..3376910 (-) 192 WP_002030817.1 YppF family protein -
  MN093_RS17615 (MN093_17615) - 3377088..3377678 (+) 591 WP_113733895.1 YppG family protein -
  MN093_RS17620 (MN093_17620) - 3377835..3378299 (+) 465 WP_002193187.1 CotD family spore coat protein -
  MN093_RS17625 (MN093_17625) - 3378356..3378910 (+) 555 WP_241875517.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23331.59 Da        Isoelectric Point: 9.5601

>NTDB_id=663143 MN093_RS17590 WP_105583987.1 3373598..3374200(-) (recU) [Bacillus mycoides strain DSM 2048]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGALLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=663143 MN093_RS17590 WP_105583987.1 3373598..3374200(-) (recU) [Bacillus mycoides strain DSM 2048]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGGCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625