Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG702_RS15065 Genome accession   NZ_CP108568
Coordinates   3375196..3376593 (+) Length   465 a.a.
NCBI ID   WP_327289387.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3370196..3381593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG702_RS15045 (OG702_15075) - 3370709..3371506 (+) 798 WP_327293237.1 hypothetical protein -
  OG702_RS15050 (OG702_15080) - 3371519..3371788 (-) 270 WP_327289385.1 helix-turn-helix transcriptional regulator -
  OG702_RS15055 (OG702_15085) map 3371833..3372600 (+) 768 WP_327289386.1 type I methionyl aminopeptidase -
  OG702_RS15060 (OG702_15090) - 3373232..3374974 (-) 1743 WP_327293238.1 hypothetical protein -
  OG702_RS15065 (OG702_15095) radA/sms 3375196..3376593 (+) 1398 WP_327289387.1 DNA repair protein RadA Machinery gene
  OG702_RS15070 (OG702_15100) disA 3376776..3377834 (+) 1059 WP_327293239.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG702_RS15075 (OG702_15105) - 3377865..3378743 (-) 879 WP_327289388.1 hypothetical protein -
  OG702_RS15080 (OG702_15110) - 3378874..3379818 (+) 945 WP_327289389.1 A/G-specific adenine glycosylase -
  OG702_RS15085 (OG702_15115) - 3379935..3381179 (-) 1245 WP_327289390.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48524.59 Da        Isoelectric Point: 7.9850

>NTDB_id=663135 OG702_RS15065 WP_327289387.1 3375196..3376593(+) (radA/sms) [Streptomyces sp. NBC_01198]
MATRKPASKDRPSYRCTECGWTTVKWLGRCGECQAWGTVEEYGGVSAVRTTAPGRVSSPARPIGQVDGRQATARSTGVPE
LDRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKASSAQSPVLYVTGEESASQVRLRADRIGALADHLYLAAETDLSAV
LGHLDDVKPALLVLDSVQTVASPEIDGAPGGMAQIREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLIRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDTQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRIKAIGKQDIYTATVGGVKLTEPAADLAVALALASAAIDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPTDPGKVPAGMRVIEVSDIGDALRALPSRASRGQSAG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=663135 OG702_RS15065 WP_327289387.1 3375196..3376593(+) (radA/sms) [Streptomyces sp. NBC_01198]
ATGGCCACCCGCAAGCCCGCTTCGAAGGACCGTCCCTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGTCAAGTGGCT
CGGCCGGTGCGGGGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGGGGTCTCCGCGGTGCGCACCACCGCGCCGG
GGCGGGTGAGTTCGCCGGCCCGGCCGATCGGCCAGGTCGACGGGCGGCAGGCGACCGCGCGCTCGACCGGGGTGCCGGAG
CTGGACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGCGCGGTGGCACTGCTCGCCGGGGAGCCGGGTGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCGAAGGCGTCCAGCGCGCAGAGCCCGGTGCTCTACGTGACGGGTGAGGAGTCGGCCTCGC
AGGTGCGGCTGCGCGCGGACCGGATCGGCGCGCTCGCCGACCACCTCTATCTGGCGGCCGAGACGGACCTGTCCGCGGTG
CTCGGGCATCTGGACGACGTCAAGCCCGCCCTGCTGGTGCTGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGACGG
CGCCCCCGGCGGCATGGCGCAGATCAGGGAGGTCGCCGGCGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGTGCGATCGCCGGCCCGCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGAGC
TTCGAGGGCGACCGGCACGCGCGGCTGCGGCTTATCCGCGGGGTGAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGGCTGGCCGACCCGTCGGGCCTGTTCCTGACCCGGCGCGACGAGCCGGTGC
CCGGCACCTGCCTGACGGTGACCCTGGAAGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCCCTGACGGTGGACACCCAG
ATCCCTTCGCCGCGGCGTACGACATCGGGCCTGGAGACGTCCCGGGTGTCGATGATGCTCGCGGTGCTCGAACAGCGCGG
CCGGATCAAGGCGATCGGCAAGCAGGACATCTACACGGCGACGGTCGGCGGGGTGAAGCTCACCGAGCCGGCCGCCGACC
TGGCGGTGGCGCTCGCGCTGGCCAGCGCGGCGATCGACACCCCGCTGCCGAAGAATCTGGTGGCGATCGGCGAGGTGGGG
CTGGCCGGCGAGGTGCGCCGGGTCACCGGTGTGCAGCGCCGCCTGTCGGAGGCGGCCAGGCTCGGCTTCACGCACGCCCT
GGTGCCCACCGACCCCGGCAAGGTGCCCGCGGGGATGCGTGTGATCGAGGTCTCGGACATCGGTGACGCGCTGCGCGCAC
TGCCGTCCAGGGCGTCCCGGGGCCAGTCCGCGGGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(79-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.952

97.634

0.419
  radA Streptococcus mitis NCTC 12261

42.763

98.065

0.419
  radA Streptococcus pneumoniae R6

42.826

97.419

0.417
  radA Streptococcus pneumoniae Rx1

42.826

97.419

0.417
  radA Streptococcus mitis SK321

42.826

97.419

0.417
  radA Streptococcus pneumoniae TIGR4

42.826

97.419

0.417
  radA Streptococcus pneumoniae D39

42.826

97.419

0.417