Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MN093_RS09500 Genome accession   NZ_CP093291
Coordinates   1813916..1815043 (+) Length   375 a.a.
NCBI ID   WP_002034987.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808916..1820043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN093_RS09470 (MN093_09470) spoIIIJ 1808952..1809719 (-) 768 WP_002089960.1 YidC family membrane integrase SpoIIIJ -
  MN093_RS09475 (MN093_09475) rnpA 1809772..1810119 (-) 348 WP_002089963.1 ribonuclease P protein component -
  MN093_RS09480 (MN093_09480) rpmH 1810196..1810330 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  MN093_RS09485 (MN093_09485) dnaA 1810894..1812234 (+) 1341 WP_002016481.1 chromosomal replication initiator protein DnaA -
  MN093_RS09490 (MN093_09490) dnaN 1812417..1813562 (+) 1146 WP_107888244.1 DNA polymerase III subunit beta -
  MN093_RS09495 (MN093_09495) yaaA 1813691..1813903 (+) 213 WP_002016484.1 S4 domain-containing protein YaaA -
  MN093_RS09500 (MN093_09500) recF 1813916..1815043 (+) 1128 WP_002034987.1 DNA replication/repair protein RecF Machinery gene
  MN093_RS09505 (MN093_09505) gyrB 1815082..1817004 (+) 1923 WP_033708486.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MN093_RS09510 (MN093_09510) gyrA 1817093..1819564 (+) 2472 WP_131247014.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43514.79 Da        Isoelectric Point: 6.8418

>NTDB_id=663124 MN093_RS09500 WP_002034987.1 1813916..1815043(+) (recF) [Bacillus mycoides strain DSM 2048]
MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGNIKGRLQRRNSS
ISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIEHETLKEAKTIHVTNGTVDCEIDRK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=663124 MN093_RS09500 WP_002034987.1 1813916..1815043(+) (recF) [Bacillus mycoides strain DSM 2048]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAGCATTTAGAGCTTTCCTTTGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACGAATCTGATGGAAGCTATTTATGTATTGGCGATGGCGAAATCTCATAGAA
CTTCGAACGATCGTGAACTCATTCGTTGGGATGAGGATTATGGTAATATAAAAGGTAGATTACAAAGGCGAAATAGTTCA
ATATCCTTAGAATTAAATATTTCAAAAAAAGGTAAAAAGGCAAAGTTAAATCAGTTAGAACAACAAAAATTGAGCCAGTA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAACTTGGACAAATAGCTCCGGTCTATTTGTATGAATTAAGTCAATATCAAAAGGTACTCACGCAACGA
AATCATTTACTTAAGAAGATGCAAGGGAATAGTAAAAATGAGGAAACTATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATTTTGCGAAAACGTTTTGAGTTTTTGCATTTACTACAAGAATGGGCTGCTCCAATTCATCGCGGAA
TTAGCAGGGGATTAGAGGAGTTAGAAATCGTTTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTTCGGGGTACAACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTAT
CCCTAAAATTGGCTGAAATTGAATTGATATACTCAGAGGTTAAGGAATATCCAATTCTTTTACTAGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCGCATCTGCTAAATACAATTCAAGGAAAAGTACAAACCTTTGTGACAACGACGAGTGT
CGAGGGAATTGAACATGAAACATTGAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.12

98.133

0.659