Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG702_RS09260 Genome accession   NZ_CP108568
Coordinates   2068708..2069487 (+) Length   259 a.a.
NCBI ID   WP_327288366.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01198     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2063708..2074487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG702_RS09245 (OG702_09280) - 2063869..2064474 (-) 606 WP_327288364.1 DUF4937 domain-containing protein -
  OG702_RS09250 (OG702_09285) - 2064653..2067535 (-) 2883 WP_327288365.1 vitamin B12-dependent ribonucleotide reductase -
  OG702_RS09255 (OG702_09290) nrdR 2067654..2068166 (-) 513 WP_033173865.1 transcriptional regulator NrdR -
  OG702_RS09260 (OG702_09295) dinR/lexA 2068708..2069487 (+) 780 WP_327288366.1 transcriptional repressor LexA Regulator
  OG702_RS09265 (OG702_09300) - 2069575..2071545 (-) 1971 WP_327288367.1 ATP-dependent DNA helicase -
  OG702_RS09270 (OG702_09305) - 2071639..2073402 (-) 1764 WP_327288368.1 IucA/IucC family siderophore biosynthesis protein -
  OG702_RS09275 (OG702_09310) - 2073462..2074172 (-) 711 WP_327288370.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28014.77 Da        Isoelectric Point: 7.4755

>NTDB_id=663117 OG702_RS09260 WP_327288366.1 2068708..2069487(+) (dinR/lexA) [Streptomyces sp. NBC_01198]
MTTTAESATGTLTAHDRSPDRIGPLDVMNEENSPKPARSLPGRPPGIRADSSGLTERQRRVIEVIRDSVQRRGYPPSMRE
IGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRASDAGHPQPTDTSGKPSASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRDNGHVWLLPHNAAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=663117 OG702_RS09260 WP_327288366.1 2068708..2069487(+) (dinR/lexA) [Streptomyces sp. NBC_01198]
GTGACCACCACCGCAGAGAGCGCCACAGGGACATTGACCGCCCATGACCGCTCCCCGGATCGAATCGGCCCGTTGGACGT
GATGAACGAAGAGAACAGCCCGAAGCCCGCGCGCTCACTTCCCGGACGGCCCCCGGGTATTCGCGCCGACAGCTCCGGCC
TCACCGAACGCCAGCGCAGGGTCATCGAAGTCATCAGGGATTCGGTGCAGCGCCGCGGATACCCCCCGTCCATGCGCGAA
ATCGGCCAGGCCGTCGGCCTGTCCAGTACGTCATCGGTGGCCCATCAGCTGATGGCACTGGAGCGGAAGGGCTTTCTGCG
CCGCGACCCGCACCGACCGCGGGCCTACGAGGTGCGTGCCTCCGACGCCGGGCACCCCCAGCCGACCGACACCTCGGGAA
AGCCCTCGGCCTCCTACGTGCCACTGGTGGGGCGGATCGCGGCCGGCGGACCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCGCTGCCCCGCCAACTCGTGGGCGACGGCGAACTGTTCGTGCTCAAGGTGGTCGGTGACTCGATGATCGAGGC
GGCCATCTGCGACGGCGACTGGGTCACCGTGCGACGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCCATGCTCG
ACGGCGAAGCCACGGTGAAGCGCTTCAAGCGGGACAACGGCCATGTGTGGCTGCTGCCGCACAACGCCGCCTACCAGCCC
ATCCCCGGCGACGAGGCCACCATCCTGGGCAAGGTCGTGGCGGTCCTGCGCAGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(52-115)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.238

81.081

0.367