Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MN093_RS03605 Genome accession   NZ_CP093291
Coordinates   688146..688892 (-) Length   248 a.a.
NCBI ID   WP_131246328.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 683146..693892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN093_RS03585 (MN093_03585) dnaG 683873..685675 (-) 1803 WP_131246329.1 DNA primase -
  MN093_RS03590 (MN093_03590) - 685757..685900 (-) 144 WP_162836445.1 hypothetical protein -
  MN093_RS03595 (MN093_03595) - 686565..687377 (-) 813 WP_002015180.1 pyruvate, water dikinase regulatory protein -
  MN093_RS03600 (MN093_03600) - 687407..688039 (-) 633 WP_002015181.1 helix-turn-helix transcriptional regulator -
  MN093_RS03605 (MN093_03605) recO 688146..688892 (-) 747 WP_131246328.1 DNA repair protein RecO Machinery gene
  MN093_RS03610 (MN093_03610) - 688926..689069 (-) 144 WP_000883924.1 YqzL family protein -
  MN093_RS03615 (MN093_03615) era 689246..690151 (-) 906 WP_002088672.1 GTPase Era -
  MN093_RS03620 (MN093_03620) - 690144..690542 (-) 399 WP_002015184.1 cytidine deaminase -
  MN093_RS03625 (MN093_03625) - 690642..690995 (-) 354 WP_002190697.1 diacylglycerol kinase family protein -
  MN093_RS03630 (MN093_03630) ybeY 690992..691462 (-) 471 WP_002088675.1 rRNA maturation RNase YbeY -
  MN093_RS03635 (MN093_03635) - 691459..693603 (-) 2145 WP_016120818.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28691.22 Da        Isoelectric Point: 7.7711

>NTDB_id=663106 MN093_RS03605 WP_131246328.1 688146..688892(-) (recO) [Bacillus mycoides strain DSM 2048]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKRHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTILNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=663106 MN093_RS03605 WP_131246328.1 688146..688892(-) (recO) [Bacillus mycoides strain DSM 2048]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATCGAATTAACCGATAAAGCAACAGAAGATAAGAGGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCACCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAACAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTTGATTTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAATATTGAATACATATTATGACGAATATTGTGGAATTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

54.656

99.597

0.544