Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MN093_RS02090 Genome accession   NZ_CP093291
Coordinates   426369..426803 (-) Length   144 a.a.
NCBI ID   WP_002014817.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 421369..431803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN093_RS02075 (MN093_02075) - 422512..423069 (+) 558 WP_060749077.1 PadR family transcriptional regulator -
  MN093_RS02080 (MN093_02080) metE 423611..425899 (+) 2289 WP_002014819.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  MN093_RS02085 (MN093_02085) comJ 425940..426329 (-) 390 WP_002088359.1 competence protein ComJ -
  MN093_RS02090 (MN093_02090) nucA/comI 426369..426803 (-) 435 WP_002014817.1 DNA-entry nuclease Machinery gene
  MN093_RS02095 (MN093_02095) - 427040..427783 (+) 744 WP_002033817.1 DUF3967 domain-containing protein -
  MN093_RS02100 (MN093_02100) - 427842..429116 (-) 1275 WP_002014814.1 sensor histidine kinase -
  MN093_RS02105 (MN093_02105) - 429426..429626 (+) 201 WP_000929276.1 hypothetical protein -
  MN093_RS02110 (MN093_02110) - 429744..430901 (+) 1158 WP_215576535.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16194.59 Da        Isoelectric Point: 8.4331

>NTDB_id=663102 MN093_RS02090 WP_002014817.1 426369..426803(-) (nucA/comI) [Bacillus mycoides strain DSM 2048]
MKQFKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=663102 MN093_RS02090 WP_002014817.1 426369..426803(-) (nucA/comI) [Bacillus mycoides strain DSM 2048]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCGGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGACATTCGGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCTCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542