Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG279_RS20185 Genome accession   NZ_CP108565
Coordinates   4543901..4545313 (-) Length   470 a.a.
NCBI ID   WP_147958882.1    Uniprot ID   A0ABY9JDC1
Organism   Streptomyces sp. NBC_01201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4538901..4550313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG279_RS20165 (OG279_20200) - 4539565..4540803 (+) 1239 WP_147958878.1 cytochrome P450 -
  OG279_RS20170 (OG279_20205) - 4540800..4541570 (+) 771 WP_147958879.1 alpha/beta fold hydrolase -
  OG279_RS20175 (OG279_20210) - 4541616..4542602 (+) 987 WP_147958880.1 aldo/keto reductase -
  OG279_RS20180 (OG279_20215) disA 4542697..4543821 (-) 1125 WP_147958881.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG279_RS20185 (OG279_20220) radA/sms 4543901..4545313 (-) 1413 WP_147958882.1 DNA repair protein RadA Machinery gene
  OG279_RS20190 (OG279_20225) - 4545457..4547301 (+) 1845 WP_187282112.1 sigma-70 family RNA polymerase sigma factor -
  OG279_RS20195 (OG279_20230) - 4547382..4548224 (-) 843 WP_147958884.1 DUF1631 domain-containing protein -
  OG279_RS20200 (OG279_20235) - 4548257..4549207 (+) 951 WP_147958885.1 Ppx/GppA phosphatase family protein -
  OG279_RS20205 (OG279_20240) - 4549299..4550111 (+) 813 WP_187282178.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49549.64 Da        Isoelectric Point: 8.2515

>NTDB_id=663078 OG279_RS20185 WP_147958882.1 4543901..4545313(-) (radA/sms) [Streptomyces sp. NBC_01201]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRTDGPQEEGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=663078 OG279_RS20185 WP_147958882.1 4543901..4545313(-) (radA/sms) [Streptomyces sp. NBC_01201]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCTGTCCGCACGACCGCTGCGG
GCCGGGTCTCGTCCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGCTCGACCGGGGTCGGCGAG
CTGGACCGCGTCCTCGGCGGAGGCCTCGTGCCCGGTGCCGTCGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTACGTCACGGCCGAGGAGTCCGCCAGCC
AGGTGCGGATGCGGGCCGACCGGATCCGGGCGATCAACGACCACCTGTACCTGGCCGCCGAGACCGACCTCTCGGCGGTC
CTGGGGCATCTGGACGCGGTCAAGCCGTCCCTCCTCGTCCTCGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCGCTCATCCGGGCCTCGAAGGAGCGCGGCATGTCGACGC
TCCTGGTGGGCCATGTGACCAAGGACGGCGCGATCGCTGGGCCCCGGCTCCTGGAGCACCTCGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCGCGCCTGCGGCTGGTGCGCGGGGTCAAGAACAGGTACGGCGCCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTGGCGGACCCCTCCGGGCTCTTCCTCACCCGCCGCGACGAGCCGGTCC
CCGGCACCTGTCTCACGGTCACCCTCGAGGGCAAGCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCCTCACCCCGGCGCACCACCTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTCGAACAGCGTGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGTGGCGTGAAGCTCACGGAACCGGCCGCGGACC
TCGCGATCGCCCTGGCCCTGGCCAGCGCGGCCAGCGACACACCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGC
CTCGCCGGGGAGGTCAGAAGGGTCACGGGGGTCCAGCGCAGGCTGGCGGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCCGGGCAGGTCCCGGCCGGCATGAAGGTCACGGAAGTGGCCGACATGGGTGACGCCCTGAGAGTCC
TCCCCCGCCGGTCTCGGACGGACGGACCACAGGAGGAGGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

41.722

96.383

0.402
  radA Streptococcus pneumoniae D39

41.722

96.383

0.402
  radA Streptococcus pneumoniae R6

41.722

96.383

0.402
  radA Streptococcus pneumoniae TIGR4

41.722

96.383

0.402
  radA Streptococcus mitis SK321

43.124

91.277

0.394
  radA Streptococcus mitis NCTC 12261

43.124

91.277

0.394