Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG279_RS19450 Genome accession   NZ_CP108565
Coordinates   4373045..4373644 (+) Length   199 a.a.
NCBI ID   WP_014155423.1    Uniprot ID   A0ABZ1K307
Organism   Streptomyces sp. NBC_01201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4368045..4378644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG279_RS19425 (OG279_19460) - 4368463..4369836 (+) 1374 WP_147958732.1 aspartate aminotransferase family protein -
  OG279_RS19430 (OG279_19465) - 4369928..4370641 (+) 714 WP_147958733.1 GntR family transcriptional regulator -
  OG279_RS19435 (OG279_19470) - 4370741..4371391 (+) 651 WP_147958734.1 hypothetical protein -
  OG279_RS19440 (OG279_19475) - 4371496..4372284 (-) 789 WP_147958735.1 SLATT domain-containing protein -
  OG279_RS19445 (OG279_19480) - 4372642..4372983 (+) 342 WP_147958736.1 YbaB/EbfC family nucleoid-associated protein -
  OG279_RS19450 (OG279_19485) recR 4373045..4373644 (+) 600 WP_014155423.1 recombination mediator RecR Machinery gene
  OG279_RS19455 (OG279_19490) - 4373728..4374387 (+) 660 WP_124277692.1 DUF5063 domain-containing protein -
  OG279_RS19460 (OG279_19495) - 4374763..4376034 (+) 1272 WP_147958737.1 aspartate kinase -
  OG279_RS19465 (OG279_19500) - 4376031..4377095 (+) 1065 WP_147958738.1 aspartate-semialdehyde dehydrogenase -
  OG279_RS19470 (OG279_19505) - 4377455..4378030 (+) 576 WP_147960356.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21915.21 Da        Isoelectric Point: 5.1777

>NTDB_id=663073 OG279_RS19450 WP_014155423.1 4373045..4373644(+) (recR) [Streptomyces sp. NBC_01201]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCEICGNVAQQEQCGICRDARRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=663073 OG279_RS19450 WP_014155423.1 4373045..4373644(+) (recR) [Streptomyces sp. NBC_01201]
TTGTACGAAGGCGTTGTTCAGGAGCTGATCGACGAGCTGGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCCGAGCCCACCGATGTGCGCCGTCTGGCCCACGCCCTGCTCGAGGTCAAGGACAAGGTCC
GGTTCTGCGAGATCTGCGGCAATGTCGCGCAGCAGGAGCAGTGCGGGATCTGCCGTGACGCGCGCCGCGACCGCTCGGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGCGAATTCCGCGGCCGCTACCACGTGCTGGG
CGGCGCCATCAGCCCCATCGAGGGCGTCGGACCCGACGATCTGCGCATCCGGGAGCTGCTGGCCCGGCTCGCGGACGGCT
CCATCACGGAGCTCATCCTGGCGACGGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTCGCCCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACGCGGCTGGCCAGCGGGCTGCCCGTCGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGAAGGCGGCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452