Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG279_RS03920 Genome accession   NZ_CP108565
Coordinates   854641..855690 (+) Length   349 a.a.
NCBI ID   WP_147961153.1    Uniprot ID   A0ABY9J4Y4
Organism   Streptomyces sp. NBC_01201     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 849641..860690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG279_RS03905 (OG279_03905) - 849966..851606 (-) 1641 WP_306102828.1 ABC-F family ATP-binding cassette domain-containing protein -
  OG279_RS03910 (OG279_03910) - 851713..852645 (+) 933 WP_147961155.1 FAD-dependent oxidoreductase -
  OG279_RS03915 (OG279_03915) - 852659..854398 (-) 1740 WP_147961154.1 BCCT family transporter -
  OG279_RS03920 (OG279_03920) cytR 854641..855690 (+) 1050 WP_147961153.1 LacI family DNA-binding transcriptional regulator Regulator
  OG279_RS03925 (OG279_03925) - 855731..856588 (-) 858 WP_147961152.1 oxygenase MpaB family protein -
  OG279_RS03930 (OG279_03930) - 856846..857724 (+) 879 WP_327330188.1 oxygenase MpaB family protein -
  OG279_RS03935 (OG279_03935) - 857721..859160 (+) 1440 WP_306102829.1 aldehyde dehydrogenase family protein -
  OG279_RS03940 (OG279_03940) - 859257..859889 (-) 633 WP_306102830.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37833.66 Da        Isoelectric Point: 5.4713

>NTDB_id=663040 OG279_RS03920 WP_147961153.1 854641..855690(+) (cytR) [Streptomyces sp. NBC_01201]
MPDPTPDPQRDVRPTLEAVAARAGVSRATASRVVNGGAGVRQPLVDQVRKAVDELGYIPNHAARTLVTRRNGAVAVIIDE
PEFRVFSDPFFSRQIRGISRELNAHDAQLVLLLVEGSGDFERVTRYLAGGHVDGVLAFSLHTDDELPSIIRRFRVPTVYG
GRPEHAARGQDAPQVPYVDCDNRGGAREAVRHLVSLGRRRIAHIAGPRDQVSALDRIDGYRDVLPDAGGDFVVDGDFTTE
GGARAMAELLDARPDVDAVFVSNDLMASGALRVLRERGLRVPEDVAVVGFDDMTSVAEATDPPLTTVRQDVEGMGRLMVR
LLMERLNSDTGAWPGSVVTPTELVRRASA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=663040 OG279_RS03920 WP_147961153.1 854641..855690(+) (cytR) [Streptomyces sp. NBC_01201]
TTGCCCGACCCGACCCCCGATCCGCAGCGTGACGTCCGGCCCACCCTGGAGGCAGTGGCCGCCCGCGCCGGTGTGTCCCG
GGCGACGGCGTCCCGCGTCGTCAACGGCGGTGCGGGCGTACGACAGCCCCTGGTGGACCAGGTGCGCAAGGCGGTCGACG
AGCTCGGCTACATCCCGAACCACGCGGCACGGACGCTGGTGACCCGGCGCAACGGCGCGGTCGCGGTGATCATCGACGAG
CCCGAGTTCAGGGTCTTCTCCGACCCGTTCTTCTCCCGTCAGATCCGCGGGATCAGCCGTGAGCTCAACGCCCACGACGC
GCAACTGGTGCTGCTCCTCGTGGAGGGCAGCGGTGACTTCGAGCGGGTCACCCGCTATCTGGCCGGTGGCCATGTGGACG
GCGTACTCGCCTTCTCCCTGCACACCGACGACGAACTGCCCTCGATCATCCGGCGGTTCCGGGTCCCGACGGTCTACGGG
GGCCGCCCGGAGCACGCGGCCCGGGGCCAGGACGCACCGCAGGTGCCGTACGTCGACTGCGACAACCGGGGCGGCGCCCG
CGAGGCCGTACGCCATCTGGTCTCGCTCGGCCGACGGCGTATCGCGCACATCGCCGGGCCCCGCGACCAGGTGTCGGCGC
TCGACCGGATCGACGGGTACCGCGACGTGCTGCCGGACGCGGGAGGTGACTTCGTCGTGGACGGTGACTTCACCACGGAG
GGCGGGGCCCGGGCCATGGCGGAGCTGCTGGACGCCCGTCCGGACGTCGACGCCGTCTTCGTGTCCAACGACCTGATGGC
GTCGGGTGCGCTGCGAGTGCTGCGCGAGCGGGGGCTCAGGGTCCCGGAGGACGTCGCCGTGGTCGGATTCGACGACATGA
CGTCGGTCGCCGAGGCCACCGACCCACCGCTGACGACGGTCCGTCAGGACGTCGAGGGCATGGGCCGGTTGATGGTGCGG
CTGCTGATGGAGCGGCTGAACAGCGACACGGGCGCCTGGCCCGGTTCCGTGGTCACCCCGACCGAGCTGGTCCGCCGGGC
CTCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(15-60)

Periplasmic binding protein-like domain (Peripla_BP_3)

(190-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.705

99.14

0.364