Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC   Type   Machinery gene
Locus tag   MNG38_RS13085 Genome accession   NZ_CP093289
Coordinates   2537242..2539572 (-) Length   776 a.a.
NCBI ID   WP_242139145.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2532242..2544572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS13050 (MNG38_13050) yqxA 2532581..2532919 (-) 339 WP_014477382.1 YqxA family protein -
  MNG38_RS13055 (MNG38_13055) spoIIP 2532936..2534141 (-) 1206 WP_014477383.1 spore autolysin SpoIIP -
  MNG38_RS13060 (MNG38_13060) gpr 2534204..2535310 (-) 1107 WP_014480309.1 GPR endopeptidase -
  MNG38_RS13065 (MNG38_13065) rpsT 2535514..2535780 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  MNG38_RS13070 (MNG38_13070) holA 2535795..2536838 (-) 1044 WP_015251674.1 DNA polymerase III subunit delta -
  MNG38_RS13075 (MNG38_13075) - 2536878..2537027 (-) 150 WP_003229985.1 hypothetical protein -
  MNG38_RS13080 (MNG38_13080) yqzM 2537068..2537202 (+) 135 WP_003229983.1 YqzM family protein -
  MNG38_RS13085 (MNG38_13085) comEC 2537242..2539572 (-) 2331 WP_242139145.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MNG38_RS13090 (MNG38_13090) comEB 2539576..2540145 (-) 570 WP_003229978.1 ComE operon protein 2 -
  MNG38_RS13095 (MNG38_13095) comEA 2540212..2540832 (-) 621 WP_024572262.1 competence protein ComEA Machinery gene
  MNG38_RS13100 (MNG38_13100) comER 2540916..2541737 (+) 822 WP_024572261.1 late competence protein ComER -
  MNG38_RS13105 (MNG38_13105) yqeM 2541803..2542546 (-) 744 WP_029946669.1 class I SAM-dependent DNA methyltransferase -
  MNG38_RS13110 (MNG38_13110) rsfS 2542543..2542899 (-) 357 WP_014480315.1 ribosome silencing factor -
  MNG38_RS13115 (MNG38_13115) yqeK 2542917..2543477 (-) 561 WP_048655098.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MNG38_RS13120 (MNG38_13120) nadD 2543467..2544036 (-) 570 WP_048655097.1 nicotinate-nucleotide adenylyltransferase -
  MNG38_RS13125 (MNG38_13125) yhbY 2544048..2544338 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -

Sequence


Protein


Download         Length: 776 a.a.        Molecular weight: 86840.40 Da        Isoelectric Point: 6.9636

>NTDB_id=662997 MNG38_RS13085 WP_242139145.1 2537242..2539572(-) (comEC) [Bacillus subtilis strain H2]
MRNSRLLLPMAAASATVGITAAAYFPAIFLFILLLLIILIKTRHAFLIIVCFFSFILFFVLYAVTDSQNVSSYRQGTYQF
KAVIDTIPKIDGDRMSMMVETPDKEKWAAAYRIQSAGEKEQLLYIEPGMSCELTGTLEEPKHATVPGAFDYNEYLYRQHI
HWNYSVTSIQNCSEPENFKYKVLSLRKHIISFTNSLLPPDSAGIVQALTVGDRFYVEDEVLTAYQKLGVVHLLAISGLHV
GILTAGLFYIMIRLGITREKASILLLLFLPFYVMLTGAAPSVLRAALMSGVYLAGSLVKWRVHSATAICLSYIVLLLFNP
YHLFEAGFQLSFAVSFSLILSSSIFQQVKTSLGQLTIVSLIAQLGSLPILLYHFHQFSIISVPMNMLMVPFYTFCILPGA
VAGVLLLSLSASFGRLFFRWFDLLISWTNRLITNIADVDVFTIMIAHPAPVLLFLFTVTIILLLMAIEKRSLSQLMVTGG
ICCTVLFLLFIYPCLSSEGEVDMIDIGQGDSMFVGAPHQRGRVLIDTGGTLSYSSEPWREKQHPFSLGEKMLIPFLTAKG
IKQLDALILTHADQDHIGEAETLLKHHKVKRLVIPKGFVSEPKDEKVLQTAREEGVTIEEVERGDVLQIKDLQFHVLSPE
APDPASKNNSSLVLWMETGVLSWILTGDLEKEGEQEVMDVFPNIKADVLKVGHHGSKGSTGEEFIQQLQPKTAIISAGKN
NRYHHPHQEVLQLLQRHSIRVLRTDQNGTIQYRYKNRVGTFSVYPPYDTSDITETN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=662997 MNG38_RS13085 WP_242139145.1 2537242..2539572(-) (comEC) [Bacillus subtilis strain H2]
ATGCGTAATTCGCGTTTGTTATTGCCTATGGCGGCAGCTTCGGCAACGGTTGGAATTACTGCCGCCGCTTATTTCCCCGC
TATTTTTCTTTTCATCCTCCTTCTCCTCATCATTTTAATCAAAACGAGGCACGCTTTTCTTATTATTGTTTGTTTCTTCT
CTTTTATATTGTTTTTTGTACTGTATGCAGTCACAGATTCTCAGAATGTCTCTTCCTATCGGCAGGGAACTTATCAATTC
AAGGCAGTGATTGACACTATTCCCAAAATTGACGGCGACCGTATGTCTATGATGGTTGAGACACCTGATAAGGAAAAATG
GGCTGCTGCGTATCGCATTCAGTCTGCTGGTGAAAAAGAACAGCTGTTATACATAGAACCAGGAATGTCATGTGAATTGA
CTGGTACATTAGAAGAACCGAAACACGCAACTGTGCCGGGTGCATTTGATTATAACGAGTATCTTTATCGGCAGCATATT
CATTGGAACTACTCTGTCACGTCTATCCAAAACTGCAGCGAACCTGAAAATTTCAAGTACAAGGTGCTCAGTTTGAGAAA
ACATATCATATCATTCACAAACAGCCTTCTGCCTCCTGATTCGGCAGGGATTGTACAGGCACTTACAGTTGGTGACAGAT
TTTATGTGGAGGATGAAGTGCTTACCGCGTATCAAAAGCTTGGTGTTGTCCATCTCTTGGCAATATCAGGACTCCATGTG
GGGATTTTGACAGCAGGTTTGTTTTATATCATGATCCGCCTTGGTATAACTAGAGAGAAGGCGTCAATTCTGTTGCTGTT
ATTTCTGCCGTTCTATGTGATGTTGACCGGCGCTGCTCCTTCAGTGCTACGCGCCGCTCTCATGTCGGGTGTTTACTTAG
CTGGAAGTCTTGTCAAATGGCGTGTCCACTCTGCAACTGCAATTTGCCTTTCATACATCGTCCTTCTGCTCTTCAATCCT
TATCATCTCTTTGAAGCCGGTTTTCAGCTATCGTTCGCCGTCAGTTTTTCTTTAATTCTATCCTCTTCTATTTTTCAGCA
GGTTAAAACCTCCTTGGGGCAGTTGACAATTGTATCACTCATCGCTCAGCTGGGCTCGCTTCCGATTCTCCTATATCATT
TTCATCAGTTTTCTATCATCAGCGTACCGATGAATATGTTGATGGTACCATTTTATACCTTCTGTATTTTGCCGGGAGCT
GTAGCAGGTGTTCTTCTATTAAGTCTTTCCGCTTCGTTTGGGAGATTGTTTTTCCGCTGGTTTGATTTATTGATAAGCTG
GACCAATAGGCTAATCACAAACATTGCAGATGTTGATGTGTTCACGATTATGATCGCACATCCTGCACCTGTTTTGCTTT
TTTTATTCACGGTCACGATCATCCTATTGCTTATGGCGATTGAAAAACGCTCCTTGTCGCAGTTGATGGTAACCGGCGGC
ATTTGCTGCACGGTGCTGTTTCTGCTCTTTATATATCCGTGTCTTAGTTCCGAAGGAGAAGTGGATATGATAGATATTGG
ACAGGGTGACAGTATGTTTGTAGGTGCTCCGCATCAGCGGGGTCGTGTCTTAATTGATACCGGCGGCACTTTGTCTTACT
CGTCAGAGCCTTGGCGCGAAAAACAGCATCCGTTTTCACTGGGGGAAAAGATGCTGATTCCGTTTTTAACTGCTAAGGGA
ATCAAACAGCTTGACGCTTTAATTCTGACGCACGCTGACCAAGATCATATCGGAGAGGCGGAGACTCTGCTGAAGCATCA
TAAAGTAAAGCGCCTCGTGATTCCGAAAGGGTTCGTTTCTGAACCTAAAGATGAGAAAGTGCTGCAGACAGCCAGAGAAG
AGGGAGTGACAATTGAAGAGGTGGAGCGAGGCGATGTATTGCAAATAAAGGATTTGCAGTTCCATGTACTGTCACCTGAA
GCACCTGATCCGGCAAGCAAAAATAATTCCTCTCTCGTTCTGTGGATGGAGACGGGCGTTCTGAGCTGGATCTTGACGGG
TGATCTGGAGAAAGAAGGGGAACAGGAGGTGATGGACGTGTTTCCAAATATTAAAGCAGATGTCTTAAAGGTGGGGCACC
ATGGGAGCAAAGGCTCTACTGGTGAAGAATTCATCCAACAGCTTCAGCCGAAAACGGCCATTATCTCAGCCGGGAAAAAC
AATCGGTACCATCATCCTCATCAAGAAGTTCTGCAACTATTACAGAGACATTCTATCCGTGTGCTGCGAACAGATCAAAA
CGGAACGATCCAATATAGATACAAAAACAGAGTTGGAACCTTTTCTGTCTATCCTCCATATGATACATCAGATATAACAG
AGACGAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

97.68

100

0.977