Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MNG38_RS11400 Genome accession   NZ_CP093289
Coordinates   2240817..2241437 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235817..2246437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS11360 (MNG38_11360) ptsA 2236948..2237454 (-) 507 WP_044052678.1 PTS glucose transporter subunit IIA -
  MNG38_RS11365 (MNG38_11365) ypqA 2237592..2238011 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  MNG38_RS11370 (MNG38_11370) sppG 2238032..2238409 (-) 378 WP_015251832.1 YppG family protein -
  MNG38_RS11375 (MNG38_11375) yppF 2238597..2238785 (+) 189 WP_003230690.1 YppF family protein -
  MNG38_RS11380 (MNG38_11380) yppE 2238824..2239195 (-) 372 WP_003246080.1 YppE family protein -
  MNG38_RS11385 (MNG38_11385) yppD 2239241..2239486 (-) 246 WP_015251831.1 YppD family protein -
  MNG38_RS11390 (MNG38_11390) sspM 2239685..2239789 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MNG38_RS11395 (MNG38_11395) yppC 2239814..2240776 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  MNG38_RS11400 (MNG38_11400) recU 2240817..2241437 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MNG38_RS11405 (MNG38_11405) ponA 2241459..2244191 (+) 2733 WP_046381141.1 PBP1A family penicillin-binding protein -
  MNG38_RS11410 (MNG38_11410) ypoC 2244267..2244761 (-) 495 WP_029726783.1 YpoC family protein -
  MNG38_RS11415 (MNG38_11415) nth 2244758..2245417 (-) 660 WP_009967580.1 endonuclease III -
  MNG38_RS11420 (MNG38_11420) dnaD 2245436..2246134 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=662984 MNG38_RS11400 WP_004399067.1 2240817..2241437(+) (recU) [Bacillus subtilis strain H2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=662984 MNG38_RS11400 WP_004399067.1 2240817..2241437(+) (recU) [Bacillus subtilis strain H2]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1