Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHSO_RS22130 Genome accession   NZ_AP014624
Coordinates   4908525..4909874 (+) Length   449 a.a.
NCBI ID   WP_045500942.1    Uniprot ID   -
Organism   Chryseobacterium sp. StRB126     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4903525..4914874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHSO_RS22115 (CHSO_4308) yidC 4903902..4905695 (-) 1794 WP_045500931.1 membrane protein insertase YidC -
  CHSO_RS22120 (CHSO_4309) - 4905952..4907562 (-) 1611 WP_045500932.1 CTP synthase -
  CHSO_RS22125 (CHSO_4310) - 4907814..4908383 (-) 570 WP_045500934.1 YceI family protein -
  CHSO_RS22130 (CHSO_4311) radA 4908525..4909874 (+) 1350 WP_045500942.1 DNA repair protein RadA Machinery gene
  CHSO_RS22135 (CHSO_4312) - 4909888..4910994 (+) 1107 WP_045500944.1 AraC family transcriptional regulator -
  CHSO_RS22140 (CHSO_4313) - 4911078..4911749 (+) 672 WP_045500946.1 class I SAM-dependent DNA methyltransferase -
  CHSO_RS22145 (CHSO_4314) - 4911746..4912453 (+) 708 WP_052480689.1 VanW family protein -
  CHSO_RS22150 (CHSO_4315) - 4912450..4913043 (+) 594 WP_045500948.1 ACP phosphodiesterase -
  CHSO_RS22155 (CHSO_4316) - 4913040..4913540 (-) 501 WP_045500950.1 DUF6702 family protein -
  CHSO_RS22160 (CHSO_4317) - 4913611..4914189 (+) 579 WP_045500952.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49928.61 Da        Isoelectric Point: 6.6094

>NTDB_id=66298 CHSO_RS22130 WP_045500942.1 4908525..4909874(+) (radA) [Chryseobacterium sp. StRB126]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKPNSKAVPFSKTKQHVINIIEVETSEEPRLKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENSIPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=66298 CHSO_RS22130 WP_045500942.1 4908525..4909874(+) (radA) [Chryseobacterium sp. StRB126]
ATGGCAAAACTGAAAACGGCATATTTCTGTCAAAACTGCGGAACCCAGTACTCCCAATGGATGGGACAATGCAAAAACTG
TGGACAATGGAATACTCTGGTGGAAGAAGTAGTGGAAAAACCCAATAGTAAAGCGGTACCCTTCTCAAAAACCAAACAAC
ACGTCATTAATATTATTGAGGTAGAAACCAGTGAAGAACCAAGACTTAAAACGCCTTCGGAAGAACTGAACCGTGTTCTT
GGTGGTGGAATTGTTTTAGGCTCCGTTACTTTAATCGGTGGTGAACCGGGAATTGGGAAATCTACTCTCTTGCTTCAGCT
TGCCTTAAAAATGAAGAAAAAAATCTTCTATGTTTCCGGGGAAGAAAGTGCTTCTCAGATTAAAATGAGAGCCGACAGGT
TAACGGATATTCAAAATCCAAACTGCTTCCTGTTTACAGAAACCTCGCTGGAAAAAATTCTTCATGAAGCTAAAAAACTG
GAACCGGATTTCATGATTATCGATTCTATTCAGACACTACAGTCTCAATTGATCGAAAGTTCTCCCGGAACGGTTTCTCA
AATCAGAGAATGTTCCAACGAGATCATTAAATACGCTAAAGAAAACAGCATTCCTGTATTTTTAGTAGGTCATATTACCA
AAGATGGCCAGATTGCCGGGCCAAAGGTATTGGAGCATATGGTAGATGTGGTCTTAAATTTTGATGGAGACCGAAATCAC
CTTTTCAGATTATTGAGAGCCAACAAAAACCGTTTTGGATCCACTTCCGAAATCGGAATTTATGAAATGGTATCCCAGGG
ATTGAAGGAAATTAAAAATCCTTCAGAAATCCTTATCACCAAGAAGTTTGAAGAACTTTCCGGAAATTCTGTCGCAGTAA
CGCTGGAAGGAAACAGACCCATGCTTTTAGAAATTCAGGCATTGGTAAGTACAGCCGTTTATGGAACTCCTCAAAGAAGC
TGTACCGGATTTGATTCAAAAAGATTAAATATGCTTCTTGCAGTTCTTGAAAAAAGGGCTGGTTTCCAATTAGGAGCTAA
AGACGTTTTCCTTAATATTACGGGTGGAATAAAAACAGATGATCCTGCTTTGGATTTAGCCGTGATAGCCTCTGTTCTAT
CTTCTAATGAAGATATAGCCATTTCAGAACATTATTGTTTTGCCGGAGAGATTGGGTTAAGCGGAGAAATTCGTCCGGTT
GCTCAAATTGAACAAAGAATTACAGAAGCTGAAAAATTGGGGTATGAAAAGATATTTGTTTCCAATCTTAATAAAATTCC
GAAAAGAAAATTCGGAATCAAGATTGAAGAAGTAAGTAAAATTGAAGATTTCCATGAAAGACTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

AAA domain (AAA_25)

(65-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.497
  radA Streptococcus pneumoniae Rx1

48.465

100

0.492
  radA Streptococcus pneumoniae D39

48.465

100

0.492
  radA Streptococcus pneumoniae R6

48.465

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.465

100

0.492
  radA Streptococcus mitis NCTC 12261

48.465

100

0.492
  radA Streptococcus mitis SK321

50.355

94.209

0.474

Multiple sequence alignment