Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MNG38_RS05970 Genome accession   NZ_CP093289
Coordinates   1136895..1137473 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain H2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131895..1142473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS21745 - 1132406..1132921 (-) 516 WP_372553879.1 methyl-accepting chemotaxis protein -
  MNG38_RS21750 - 1133162..1133788 (-) 627 Protein_1108 protoglobin domain-containing protein -
  MNG38_RS05955 (MNG38_05955) comW 1133843..1135372 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  MNG38_RS05960 (MNG38_05960) yhxC 1135484..1136341 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  MNG38_RS05965 (MNG38_05965) yhzC 1136369..1136602 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MNG38_RS05970 (MNG38_05970) comK 1136895..1137473 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  MNG38_RS05975 (MNG38_05975) yhxD 1137518..1138417 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  MNG38_RS05980 (MNG38_05980) yhjA 1138635..1138904 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  MNG38_RS05985 (MNG38_05985) yhjB 1138948..1140417 (-) 1470 WP_015252422.1 sodium:solute symporter family protein -
  MNG38_RS05990 (MNG38_05990) yhjC 1140414..1140614 (-) 201 WP_015252421.1 DUF3311 domain-containing protein -
  MNG38_RS05995 (MNG38_05995) - 1140813..1141184 (-) 372 WP_014476361.1 hypothetical protein -
  MNG38_RS06000 (MNG38_06000) yhjE 1141336..1141959 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  MNG38_RS06005 (MNG38_06005) lepB 1141961..1142467 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=662965 MNG38_RS05970 WP_003245329.1 1136895..1137473(+) (comK) [Bacillus subtilis strain H2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=662965 MNG38_RS05970 WP_003245329.1 1136895..1137473(+) (comK) [Bacillus subtilis strain H2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1