Detailed information NTG0066295

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CHSO_RS21220
• Genome accession: NZ_AP014624
• Coordinates: 4686928..4687581 (+)
• Length: 217 a.a.
• NCBI ID: WP_045500611.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. StRB126
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4681928..4692581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHSO_RS21205 (CHSO_4127)	aceA	4682327..4683607 (-)	1281	WP_045500603.1	isocitrate lyase	-
CHSO_RS21210 (CHSO_4128)	aceB	4683694..4685268 (-)	1575	WP_045500606.1	malate synthase A	-
CHSO_RS21215 (CHSO_4129)	-	4685395..4686867 (+)	1473	WP_045500608.1	helix-turn-helix domain-containing protein	-
CHSO_RS21220 (CHSO_4130)	comF	4686928..4687581 (+)	654	WP_045500611.1	ComF family protein	Machinery gene
CHSO_RS21225 (CHSO_4131)	-	4687773..4688459 (+)	687	WP_045500613.1	alpha/beta fold hydrolase	-
CHSO_RS21230 (CHSO_4132)	upp	4688461..4689111 (-)	651	WP_045500615.1	uracil phosphoribosyltransferase	-
CHSO_RS21235 (CHSO_4133)	der	4689265..4690575 (-)	1311	WP_045500618.1	ribosome biogenesis GTPase Der	-
CHSO_RS21245 (CHSO_4134)	-	4691120..4691371 (+)	252	WP_144429002.1	hypothetical protein	-
CHSO_RS21255 (CHSO_4136)	-	4691611..4692000 (+)	390	WP_045500626.1	hypothetical protein	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25368.46 Da
• Isoelectric Point: 8.8174

>NTDB_id=66295 CHSO_RS21220 WP_045500611.1 4686928..4687581(+) (comF) [Chryseobacterium sp. StRB126]
MILDLLFPNRCLHCNRIIEADLLVCGLCFGQIHFTHYDYSKNNPVKEQCKLSFPVENAYALIQFEKDSLSRKIIHELKYK
SREIIGKILAEWTIERLDFRDQKPELLVSVPLHPKKQRERGYNQLHLYTEALSKYYKIPFDHQLIKRNYYSKAQALKDKK
HRQETVNTFSVTKPITEKHILLIDDVFTTGTTVSSIAWEILNAGDNKVSVLVMAMDV

Nucleotide

• Length: 654 bp

>NTDB_id=66295 CHSO_RS21220 WP_045500611.1 4686928..4687581(+) (comF) [Chryseobacterium sp. StRB126]
ATGATATTAGACTTACTCTTTCCCAACCGATGTCTTCACTGTAATAGAATTATTGAGGCTGATCTTCTGGTTTGCGGTCT
ATGCTTCGGACAGATCCATTTTACCCATTATGATTATTCCAAAAATAATCCGGTTAAAGAGCAATGCAAACTTTCGTTTC
CTGTTGAGAATGCCTATGCTCTTATTCAGTTTGAAAAAGATAGTTTAAGCAGGAAAATCATTCATGAACTTAAATATAAA
AGCAGAGAAATCATAGGAAAAATTCTAGCAGAATGGACTATCGAAAGATTGGATTTCAGAGATCAGAAACCTGAGCTTCT
GGTAAGCGTGCCTCTTCATCCCAAAAAACAGAGAGAAAGAGGTTATAATCAACTTCATTTATATACGGAAGCTCTTTCAA
AATACTATAAAATTCCGTTCGACCATCAATTAATCAAGAGAAATTATTATTCTAAAGCCCAAGCGCTGAAGGACAAAAAA
CACAGACAGGAAACTGTTAATACATTTTCGGTTACAAAACCTATTACAGAAAAACATATTCTGCTGATTGATGATGTTTT
TACAACAGGAACTACCGTTTCTTCTATTGCCTGGGAGATTTTAAATGCCGGAGATAACAAGGTGAGTGTACTGGTGATGG
CAATGGATGTATAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	52.315	99.539	0.521