Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG457_RS28860 Genome accession   NZ_CP108554
Coordinates   6243448..6244473 (+) Length   341 a.a.
NCBI ID   WP_327385286.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01207     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6238448..6249473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG457_RS28840 (OG457_28840) - 6238712..6240169 (-) 1458 WP_327385282.1 GH1 family beta-glucosidase -
  OG457_RS28845 (OG457_28845) - 6240166..6240990 (-) 825 WP_327385283.1 carbohydrate ABC transporter permease -
  OG457_RS28850 (OG457_28850) - 6240987..6241982 (-) 996 WP_327385284.1 sugar ABC transporter permease -
  OG457_RS28855 (OG457_28855) - 6241990..6243345 (-) 1356 WP_327385285.1 extracellular solute-binding protein -
  OG457_RS28860 (OG457_28860) cytR 6243448..6244473 (+) 1026 WP_327385286.1 LacI family DNA-binding transcriptional regulator Regulator
  OG457_RS28870 (OG457_28870) orn 6244725..6245327 (-) 603 WP_030008729.1 oligoribonuclease -
  OG457_RS28875 (OG457_28875) - 6245433..6246608 (-) 1176 WP_150257537.1 helix-turn-helix domain-containing protein -
  OG457_RS28880 (OG457_28880) - 6246985..6247305 (-) 321 WP_327388612.1 hypothetical protein -
  OG457_RS28885 (OG457_28885) - 6247751..6248284 (+) 534 WP_266596220.1 universal stress protein -
  OG457_RS28890 (OG457_28890) - 6248440..6249009 (+) 570 WP_327385287.1 acetate uptake transporter -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36244.21 Da        Isoelectric Point: 7.1913

>NTDB_id=662924 OG457_RS28860 WP_327385286.1 6243448..6244473(+) (cytR) [Streptomyces sp. NBC_01207]
MNGHGRSGGRPTLEEVAARAGVGRGTVSRVINGSSKVSEHTRVAVEAAVAELGYVPNRAARALAANRTDAIALVIPEPEA
RFFAEPYFSEVVRGVGAELADTEVQLVLTLAGSDRERRRLAQYLSGHRVDGVLLVSVHAGDPLPELLAELGIPTVISGRR
SAAETLPSVDSDNLAGAAEAVSHLLDRGRRAIATITGPLDVYGAQCRLDGYRKALAAAGHPVDERMIAVGDFTEEGGRRA
MRALLERHPGLDAVFAASDVMAAGARRELRAAGRTIPRDVALVGFDDSVVARHMDPPLTSVRQPIEQMGRTMTRMLLDRI
AGERGEVAAVLPNRLVVRESS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=662924 OG457_RS28860 WP_327385286.1 6243448..6244473(+) (cytR) [Streptomyces sp. NBC_01207]
ATGAACGGGCACGGGCGCAGTGGGGGAAGACCGACCCTGGAGGAGGTCGCGGCGCGCGCCGGAGTCGGGCGCGGCACGGT
CTCCCGGGTGATCAACGGATCCTCCAAGGTCAGCGAGCACACCAGGGTCGCCGTCGAGGCGGCCGTGGCCGAGCTGGGGT
ACGTACCGAACCGCGCCGCGCGCGCCCTCGCGGCCAACCGCACCGACGCCATAGCCCTCGTGATCCCCGAGCCCGAGGCC
CGCTTCTTCGCCGAGCCCTACTTCTCCGAAGTGGTCCGCGGGGTCGGCGCCGAGCTCGCCGACACCGAGGTCCAGCTCGT
CCTCACCCTGGCGGGCAGCGACCGCGAGCGCCGCCGGCTCGCCCAGTACCTGTCCGGGCACCGCGTCGACGGGGTGCTGC
TCGTCTCCGTCCACGCCGGGGACCCGCTGCCGGAGCTGCTGGCCGAACTCGGCATCCCGACGGTGATCAGCGGCCGCCGC
TCGGCCGCCGAGACCCTGCCCAGCGTGGACTCCGACAACCTGGCGGGCGCGGCCGAGGCCGTGAGCCACCTCCTCGACCG
GGGGCGCCGCGCGATCGCCACGATCACCGGCCCGCTGGACGTGTACGGGGCCCAGTGCCGCCTCGACGGCTACCGGAAGG
CCCTGGCCGCCGCCGGACACCCCGTCGACGAGCGGATGATCGCGGTCGGCGACTTCACCGAGGAGGGCGGCCGGCGGGCC
ATGCGCGCACTGCTGGAGCGCCACCCCGGGCTCGACGCGGTCTTCGCCGCCTCGGACGTCATGGCGGCGGGCGCCCGGCG
GGAGCTGCGCGCGGCCGGCCGGACGATCCCGCGGGACGTGGCGCTGGTCGGCTTTGACGACTCGGTGGTGGCCCGACACA
TGGACCCGCCGCTGACCAGCGTCCGGCAGCCGATCGAGCAGATGGGCCGGACCATGACGCGGATGCTGCTGGACCGGATC
GCGGGGGAGCGGGGCGAGGTGGCCGCCGTGCTGCCGAACCGGCTGGTGGTCCGGGAGTCGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.982

99.12

0.367