Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MMW58_RS19195 Genome accession   NZ_CP093276
Coordinates   3954921..3955520 (-) Length   199 a.a.
NCBI ID   WP_133597122.1    Uniprot ID   -
Organism   Raoultella sp. HC6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3949921..3960520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMW58_RS19180 helD 3950131..3952185 (-) 2055 WP_241721888.1 DNA helicase IV -
  MMW58_RS19185 - 3952308..3952754 (+) 447 WP_041144834.1 YccF domain-containing protein -
  MMW58_RS19190 yccS 3952772..3954907 (+) 2136 WP_133597124.1 YccS family putative transporter -
  MMW58_RS19195 sxy/tfoX 3954921..3955520 (-) 600 WP_133597122.1 TfoX/Sxy family DNA transformation protein Regulator
  MMW58_RS19200 sulA 3955986..3956495 (+) 510 WP_133597120.1 SOS-induced cell division inhibitor SulA -
  MMW58_RS19205 ompA 3956848..3957918 (+) 1071 WP_133597118.1 porin OmpA -
  MMW58_RS19210 matP 3958022..3958474 (-) 453 WP_041144830.1 macrodomain Ter protein MatP -
  MMW58_RS19215 - 3958660..3960417 (+) 1758 WP_159237184.1 Lon protease family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22690.60 Da        Isoelectric Point: 10.1929

>NTDB_id=662917 MMW58_RS19195 WP_133597122.1 3954921..3955520(-) (sxy/tfoX) [Raoultella sp. HC6]
MKKISSLRFHKFQKCLSPLGKIICRPLFGGYSLAIDNTVFAMVAEGEIYLKICEQGAAYCVAHENQLLKMRKNGRPILLK
YYQINETLWCDSKMLFKLSSLSLQAAQKEKNQQRYSGRLKDLPNISFHMELLLINSGVIDQQALRHIGAQRAWLKLRESN
KAVTLNILYSLEGAITGVHAAALPTARRQELQEWALNQR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=662917 MMW58_RS19195 WP_133597122.1 3954921..3955520(-) (sxy/tfoX) [Raoultella sp. HC6]
ATGAAAAAAATATCATCCCTACGGTTTCATAAATTTCAGAAGTGCTTGTCGCCATTAGGAAAAATAATCTGCCGTCCTTT
GTTTGGTGGCTATAGCCTGGCAATAGACAACACCGTATTTGCGATGGTTGCAGAGGGGGAGATCTATCTTAAGATTTGTG
AGCAGGGCGCCGCATATTGCGTGGCTCATGAAAATCAGCTTTTAAAAATGCGAAAAAACGGGCGGCCAATTTTGCTTAAA
TATTATCAAATAAATGAAACGCTTTGGTGTGACAGTAAAATGCTTTTCAAACTATCGTCGCTTTCATTGCAGGCGGCGCA
AAAGGAAAAGAACCAGCAGCGTTATTCCGGCAGGTTGAAAGATCTGCCAAATATTAGTTTTCATATGGAGCTACTATTAA
TTAACTCGGGAGTAATAGATCAGCAGGCGCTGCGTCATATTGGCGCACAGCGTGCGTGGCTAAAGCTGCGAGAGTCGAAT
AAGGCCGTGACGCTGAATATTCTCTATTCACTGGAAGGGGCGATTACCGGCGTTCACGCCGCTGCGCTCCCGACGGCACG
GCGTCAGGAGCTGCAGGAGTGGGCTCTTAACCAGCGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.333

97.99

0.523