Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MNY68_RS13240 Genome accession   NZ_CP093260
Coordinates   2990925..2992310 (-) Length   461 a.a.
NCBI ID   WP_047255051.1    Uniprot ID   A0A0N1KI64
Organism   Moellerella wisconsensis strain W17-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2985925..2997310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY68_RS13230 (MNY68_13230) ettA 2987935..2989602 (+) 1668 WP_047255053.1 energy-dependent translational throttle protein EttA -
  MNY68_RS13235 (MNY68_13235) nadR 2989679..2990911 (-) 1233 WP_241540581.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  MNY68_RS13240 (MNY68_13240) radA 2990925..2992310 (-) 1386 WP_047255051.1 DNA repair protein RadA Machinery gene
  MNY68_RS13245 (MNY68_13245) serB 2992340..2993317 (-) 978 WP_047255050.1 phosphoserine phosphatase -
  MNY68_RS13250 (MNY68_13250) - 2993316..2993501 (+) 186 WP_156170979.1 hypothetical protein -
  MNY68_RS13255 (MNY68_13255) - 2993510..2994286 (+) 777 WP_072057320.1 AhpA/YtjB family protein -
  MNY68_RS13260 (MNY68_13260) deoD 2994834..2995550 (-) 717 WP_047255049.1 purine-nucleoside phosphorylase -
  MNY68_RS13265 (MNY68_13265) deoB 2995688..2996911 (-) 1224 WP_047255048.1 phosphopentomutase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49795.44 Da        Isoelectric Point: 7.6486

>NTDB_id=662875 MNY68_RS13240 WP_047255051.1 2990925..2992310(-) (radA) [Moellerella wisconsensis strain W17-3]
MAKGAKRAFVCNECGADYPRWQGQCTACNAWNTITEIRLAASPAAARNDRFTGYAGNSGISKVQKLSEISLEEVPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTMCQLSAQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLTAEQENPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDGDSRFRTLRSHKNRFGAVNELGVFAMTEQGLKEVSNPSAIFLSRGEEITSGSSVMVVWEGTRPLLVEIQALVDH
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLLMADQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPRDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPYANMPKKPLPNMKVYGVKKLADALSVMEEFD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=662875 MNY68_RS13240 WP_047255051.1 2990925..2992310(-) (radA) [Moellerella wisconsensis strain W17-3]
GTGGCAAAAGGTGCAAAACGAGCATTTGTCTGTAATGAATGCGGTGCAGATTATCCTCGATGGCAGGGGCAATGCACTGC
CTGTAATGCGTGGAATACCATTACAGAAATCCGTTTAGCGGCCAGCCCAGCAGCGGCTCGTAATGATCGATTTACTGGCT
ACGCGGGTAATAGCGGTATCAGTAAAGTACAAAAACTTTCTGAAATTAGCTTAGAAGAAGTCCCTCGCTTTTCGACTGGA
TTTAAAGAGTTTGACCGCGTGTTAGGGGGAGGGGTTGTCCCCGGGAGTGCCATATTGATCGGTGGAAATCCTGGTGCAGG
GAAAAGTACGTTATTGTTACAGACGATGTGTCAGTTATCGGCACAAATGAAAACTCTGTATGTCACCGGTGAAGAATCCT
TGCAGCAAGTAGCGATGCGAGCCCATCGTTTAGGGTTACCGACCGATAATTTGAATATGTTATCGGAAACCAGTATCGAA
CAAATCTGCTTAACAGCAGAACAAGAAAACCCTAAATTAATGGTTATCGACTCGATTCAAGTCATGCATATGGCTGATAT
TCAATCCTCCCCGGGGAGCGTGGCGCAGGTCAGAGAAACAGCCGCTTATTTAACACGCTTTGCCAAAACCCGAGGTGTGG
CAATCGTTATGGTCGGGCATGTCACCAAAGATGGTTCATTAGCTGGCCCTAAAGTATTGGAGCACTGCATCGATTGCTCA
GTAATGCTCGACGGTGATGGTGATTCACGGTTCAGAACTTTACGTAGCCATAAAAACCGTTTTGGGGCGGTGAATGAGCT
GGGGGTCTTTGCCATGACAGAGCAAGGACTTAAAGAGGTTAGCAATCCTTCTGCTATATTCTTGAGTCGCGGCGAAGAAA
TTACTTCTGGCAGTTCGGTCATGGTAGTTTGGGAAGGCACGCGACCTTTATTGGTTGAGATCCAAGCGCTAGTGGATCAT
TCAATGATGTCTAATCCGCGTCGTGTTGCTGTTGGCTTAGAACAAAATCGCTTAGCTATTTTATTGGCCGTGCTGCATCG
TCACGGTGGATTATTAATGGCGGATCAAGACGTATTCGTCAATGTCGTTGGTGGGGTAAAAGTCACTGAAACTAGTGCGG
ATTTAGCTTTATTGCTCTCTTTAGTGTCTAGTTTTCGTGATAGACCTCTACCACGGGATTTAGTGGTATTTGGCGAAGTT
GGTTTAGCCGGTGAAATTCGCCCCGTTCCTAGTGGACAAGAACGTATTTCTGAAGCGGCTAAACATGGGTTCAAACGCGC
CATCGTACCTTATGCTAATATGCCTAAAAAGCCCTTACCGAACATGAAAGTGTACGGCGTAAAAAAACTTGCTGATGCAC
TCAGCGTAATGGAAGAATTTGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(88-225)

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N1KI64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

99.783

0.484
  radA Streptococcus pneumoniae Rx1

44.176

98.698

0.436
  radA Streptococcus pneumoniae D39

44.176

98.698

0.436
  radA Streptococcus pneumoniae R6

44.176

98.698

0.436
  radA Streptococcus pneumoniae TIGR4

44.176

98.698

0.436
  radA Streptococcus mitis NCTC 12261

43.956

98.698

0.434
  radA Streptococcus mitis SK321

43.956

98.698

0.434