Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MNY24_RS14230 Genome accession   NZ_CP093226
Coordinates   2936328..2936957 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC-16-35     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2931328..2941957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY24_RS14215 helD 2931570..2933624 (-) 2055 WP_001295354.1 DNA helicase IV -
  MNY24_RS14220 yccF 2933747..2934193 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MNY24_RS14225 yccS 2934203..2936365 (+) 2163 WP_000875058.1 YccS family putative transporter -
  MNY24_RS14230 sxy/tfoX 2936328..2936957 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MNY24_RS14235 sulA 2937176..2937685 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MNY24_RS14240 ompA 2938042..2939082 (+) 1041 WP_000750416.1 porin OmpA -
  MNY24_RS14245 matP 2939158..2939610 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MNY24_RS14250 ycbZ 2939796..2941556 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=662742 MNY24_RS14230 WP_000839153.1 2936328..2936957(-) (sxy/tfoX) [Escherichia coli strain EC-16-35]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=662742 MNY24_RS14230 WP_000839153.1 2936328..2936957(-) (sxy/tfoX) [Escherichia coli strain EC-16-35]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1