Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MNY58_RS12005 Genome accession   NZ_CP093217
Coordinates   2452317..2453687 (-) Length   456 a.a.
NCBI ID   WP_099090515.1    Uniprot ID   A0A2C6WMU6
Organism   Staphylococcus edaphicus strain CCM 8731     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2447317..2458687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY58_RS11990 (MNY58_11985) cysE 2448324..2448965 (-) 642 WP_099090527.1 serine O-acetyltransferase -
  MNY58_RS11995 (MNY58_11990) gltX 2449315..2450769 (-) 1455 WP_099090513.1 glutamate--tRNA ligase -
  MNY58_RS12000 (MNY58_11995) - 2451190..2452248 (-) 1059 WP_099090514.1 PIN/TRAM domain-containing protein -
  MNY58_RS12005 (MNY58_12000) radA 2452317..2453687 (-) 1371 WP_099090515.1 DNA repair protein RadA Machinery gene
  MNY58_RS12010 (MNY58_12005) - 2454086..2456548 (-) 2463 WP_099090516.1 ATP-dependent Clp protease ATP-binding subunit -
  MNY58_RS12015 (MNY58_12010) - 2456560..2457570 (-) 1011 WP_161940546.1 protein arginine kinase -
  MNY58_RS12020 (MNY58_12015) - 2457563..2458114 (-) 552 WP_099090518.1 UvrB/UvrC motif-containing protein -
  MNY58_RS12025 (MNY58_12020) - 2458131..2458592 (-) 462 WP_099090519.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50336.91 Da        Isoelectric Point: 7.4847

>NTDB_id=662627 MNY58_RS12005 WP_099090515.1 2452317..2453687(-) (radA) [Staphylococcus edaphicus strain CCM 8731]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNVSKVQKLNDIKHETTPRVKTNSTEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSKNVLYITGEESLSQTKLRAERLDEDSSELNVFAETDLEVIHETV
KQIKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVVIPESNIGGWQFPEGIKVIGVKNVHEALKYALTKH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=662627 MNY58_RS12005 WP_099090515.1 2452317..2453687(-) (radA) [Staphylococcus edaphicus strain CCM 8731]
TTGGCTAAAAAGAAAGTGATTTTTGAATGTATGGCATGCGGTTATCAGTCACCAAAATGGATGGGGAAATGTCCAAATTG
TGGCGGATGGAATCAAATGGAAGAAATTGTCGAACAAAAGGCAGCCAGTCCAAAACATGGCGTACGCAGTCGAGACAATG
TATCTAAAGTGCAGAAACTAAATGACATCAAACACGAAACAACACCAAGAGTTAAGACCAATTCGACCGAATTTAACCGT
GTGTTAGGTGGAGGTATTGTAAATGGATCGCTTGTCTTAATCGGTGGTGATCCAGGTATTGGTAAATCGACATTATTGTT
ACAGATTTGCGCAGCATTATCTCAATCTAAAAATGTACTATATATCACGGGTGAAGAATCATTAAGCCAAACGAAGTTAA
GAGCAGAAAGATTAGATGAAGATTCAAGTGAATTAAATGTATTTGCTGAAACAGATTTAGAAGTCATTCATGAAACAGTT
AAACAAATTAAACCAGATTTACTTGTTGTGGATTCTATACAAACAATATTCCATCCTGAAATCAGCTCAGCACCAGGGTC
TGTGTCACAGGTGAGAGAGAGTACCCAAAGTTTAATGAACATTGCTAAGCAGATGAATATTGCAACATTTATTGTTGGGC
ATGTGACGAAAGAAGGACAAATAGCAGGACCGCGCCTGCTTGAACATATGGTAGATACCGTTCTTTATTTTGAAGGCGAT
GAACATCATGCGTATCGTATTCTAAGGGCCGTGAAAAACCGCTTTGGTTCAACAAATGAGATGGGTATCTTTGAAATGAA
GCAAACGGGATTAAAAGGTGTTAAAAACCCTTCGGAAATGTTCCTTGAAGAACGTTCAACGAATGTACCAGGCTCTACAA
TTGTTTCAACTATGGAAGGCACTAGACCGTTATTGATTGAAGTGCAAGCCCTGGTAACACCAACGACGTTTAATAATCCA
AGGCGTATGGCAACAGGAATAGACCATAATCGATTGAGTTTGTTAATGGCTGTATTAGAGAAAAAAGAGAACTATTTACT
GCAACAACAAGATGCTTATATCAAGGTTGCTGGAGGTGTGAGGCTTACTGAACCAGCCGTAGACTTAGGTATAATCATAG
CAACGGCTTCTAGCTTTAAAGATTTAACCGTAGATGGCCTAGATTGTTTCATAGGTGAGGTAGGTCTTACTGGTGAAGTG
AGGCGTGTTTCTCGAATAGAACAACGTGTGCAAGAAGCTGAGAAGTTAGGTTTTAAACGCGTTGTTATACCAGAATCAAA
TATAGGTGGATGGCAATTTCCTGAAGGTATAAAAGTAATAGGTGTTAAAAATGTCCATGAAGCTCTAAAATATGCATTAA
CAAAACATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C6WMU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.656
  radA Streptococcus pneumoniae Rx1

59.778

98.684

0.59
  radA Streptococcus pneumoniae D39

59.778

98.684

0.59
  radA Streptococcus pneumoniae R6

59.778

98.684

0.59
  radA Streptococcus pneumoniae TIGR4

59.778

98.684

0.59
  radA Streptococcus mitis NCTC 12261

59.778

98.684

0.59
  radA Streptococcus mitis SK321

59.778

98.684

0.59