Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MNY58_RS04490 Genome accession   NZ_CP093217
Coordinates   975424..976140 (-) Length   238 a.a.
NCBI ID   WP_099091239.1    Uniprot ID   A0A2C6WJY4
Organism   Staphylococcus edaphicus strain CCM 8731     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 970424..981140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY58_RS04470 (MNY58_04470) - 971488..971712 (+) 225 WP_099091235.1 sulfurtransferase TusA family protein -
  MNY58_RS04475 (MNY58_04475) - 971859..972812 (+) 954 WP_099091236.1 LacI family DNA-binding transcriptional regulator -
  MNY58_RS04480 (MNY58_04480) - 972902..974383 (+) 1482 WP_099091237.1 sucrose-6-phosphate hydrolase -
  MNY58_RS04485 (MNY58_04485) - 974383..975351 (+) 969 WP_099091238.1 carbohydrate kinase -
  MNY58_RS04490 (MNY58_04490) agrA 975424..976140 (-) 717 WP_099091239.1 LytTR family DNA-binding domain-containing protein Regulator
  MNY58_RS04495 (MNY58_04495) - 976153..977449 (-) 1297 Protein_881 GHKL domain-containing protein -
  MNY58_RS04500 (MNY58_04500) - 977475..977612 (-) 138 WP_099091241.1 cyclic lactone autoinducer peptide -
  MNY58_RS04505 (MNY58_04505) - 977615..978184 (-) 570 WP_099091242.1 accessory gene regulator AgrB -
  MNY58_RS04510 (MNY58_04510) - 978944..979729 (-) 786 WP_099091243.1 carbon-nitrogen family hydrolase -
  MNY58_RS04515 (MNY58_04515) - 979909..980538 (-) 630 WP_099091244.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27911.80 Da        Isoelectric Point: 5.8677

>NTDB_id=662603 MNY58_RS04490 WP_099091239.1 975424..976140(-) (agrA) [Staphylococcus edaphicus strain CCM 8731]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDVLERSKNLKDIGCYFLDIQLEADINGIKLASEIRKHDP
VSNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDALKSRIIDCLETSESRLKLLSKKSSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDDRFFRCHNSFVVNRHNIDSIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=662603 MNY58_RS04490 WP_099091239.1 975424..976140(-) (agrA) [Staphylococcus edaphicus strain CCM 8731]
ATGAAAATATTCATTTGCGAAGATGATGAAAGACAACGCGAACACATGGTTTCTATTATCAACAACTACATCATGATTGA
AGAAAAACCAATGGAAATAGAAGTGGCTACTGCGGATCCTTATGATGTCTTAGAACGTTCAAAGAATCTAAAAGACATAG
GATGTTACTTCTTAGATATTCAGCTCGAAGCTGATATCAACGGTATCAAACTGGCTAGTGAGATTCGAAAACATGACCCA
GTGAGTAACATCATCTTTGTTACGAGCCACAGTGAATTAACTTACCTTACCTTTGTTTACAAGGTTGCTGCGATGGATTT
CATCTTTAAAGATGATCCTGATGCATTAAAATCAAGAATTATTGATTGTCTTGAAACTTCGGAGTCACGTTTAAAACTCC
TATCTAAAAAAAGCAGTGTTGAAACAATAGAGTTAAAACGAGGAAGCAATTCGATTTATGTACAATACGACGATGTCATG
TTCTTCGAGTCTTCTACCAAGTCTCATCGTTTGATTGCACACCTCGATAATAGGCAAATTGAATTCTATGGTAATTTAAA
AGAGCTAGATCAACTCGATGATCGTTTTTTCAGATGCCATAATAGCTTTGTTGTAAATCGTCATAATATTGATTCAATCG
ACTCAAAATCACGTGTGGTTTACTTTAAAAACAATGAACATTGTTACGCTTCTGTTAGAAATGTAAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C6WJY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.294

100

0.853