Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG725_RS08495 Genome accession   NZ_CP108541
Coordinates   2042454..2043251 (+) Length   265 a.a.
NCBI ID   WP_014153661.1    Uniprot ID   A0ABZ1K9S6
Organism   Streptomyces sp. NBC_01213     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2037454..2048251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG725_RS08480 (OG725_08470) - 2037788..2038024 (+) 237 WP_371606086.1 hypothetical protein -
  OG725_RS08485 (OG725_08475) - 2038352..2041255 (-) 2904 WP_327329888.1 vitamin B12-dependent ribonucleotide reductase -
  OG725_RS08490 (OG725_08480) nrdR 2041403..2041918 (-) 516 WP_306103307.1 transcriptional regulator NrdR -
  OG725_RS08495 (OG725_08485) dinR/lexA 2042454..2043251 (+) 798 WP_014153661.1 transcriptional repressor LexA Regulator
  OG725_RS08500 (OG725_08490) - 2043452..2045419 (-) 1968 WP_371606087.1 ATP-dependent DNA helicase -
  OG725_RS08505 (OG725_08495) - 2045470..2047329 (-) 1860 WP_371606088.1 IucA/IucC family siderophore biosynthesis protein -
  OG725_RS08510 (OG725_08500) - 2047390..2048109 (-) 720 WP_306103309.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28799.61 Da        Isoelectric Point: 7.1467

>NTDB_id=662583 OG725_RS08495 WP_014153661.1 2042454..2043251(+) (dinR/lexA) [Streptomyces sp. NBC_01213]
MTTTADSATITAHDHRSQSRLEPVHAMNDSVMNAEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=662583 OG725_RS08495 WP_014153661.1 2042454..2043251(+) (dinR/lexA) [Streptomyces sp. NBC_01213]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCATGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCATGAACGCGGAGGGGCCAGAGCCCGCACGACCCGCGCGCTCCTTGCCCGGACGCCCCCCAGGAATTC
GGGCGGACAGCTCGGGGCTCACCGACCGGCAGCGGCGCGTGATCGAGGTGATCCGGGATTCCGTCCAGCGGCGGGGATAC
CCGCCGTCGATGCGCGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACCTCGTCCGTGGCCCACCAGCTGATGGCTCTGGA
GCGCAAGGGTTTTCTGCGCCGCGACCCTCACCGGCCACGTGCCTACGAGGTCCGGGGCTCGGACCAGCCGAGCACGCAGC
AGACCGACACCACCGGGAAGCCCGCGGCCTCGTACGTGCCACTGGTCGGCCGGATCGCCGCCGGTGGACCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGG
TGATTCGATGATCGAGGCAGCGATCATGGACGGCGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACA
TCGTCGCCGCCATGTTGGACGGGGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCAC
AACGCCGCCTACCAGCCGATCCCCGGTGACGAGGCGACGATCCTGGGCAAGGTCGTCGCAGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37