Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MNU50_RS00300 Genome accession   NZ_CP093210
Coordinates   68114..69463 (-) Length   449 a.a.
NCBI ID   WP_000815640.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain TSM-50     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 44000..74905 68114..69463 within 0


Gene organization within MGE regions


Location: 44000..74905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNU50_RS00180 (MNU50_00180) - 44000..45679 (+) 1680 WP_016187646.1 recombinase family protein -
  MNU50_RS00185 (MNU50_00185) - 45768..46106 (+) 339 WP_031796882.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MNU50_RS00190 (MNU50_00190) - 46200..46511 (+) 312 WP_168754273.1 DUF960 family protein -
  MNU50_RS00195 (MNU50_00195) - 46529..47032 (+) 504 WP_173896757.1 DUF1643 domain-containing protein -
  MNU50_RS00200 (MNU50_00200) - 47046..47267 (+) 222 WP_168754275.1 hypothetical protein -
  MNU50_RS00205 (MNU50_00205) - 47346..49613 (-) 2268 WP_168754276.1 CDP-glycerol:glycerophosphate glycerophosphotransferase -
  MNU50_RS00210 (MNU50_00210) - 49870..50052 (+) 183 WP_031864945.1 hypothetical protein -
  MNU50_RS00215 (MNU50_00215) - 51094..51394 (-) 301 Protein_40 type I restriction-modification system subunit M N-terminal domain-containing protein -
  MNU50_RS00220 (MNU50_00220) - 51576..52445 (+) 870 WP_168754285.1 hypothetical protein -
  MNU50_RS00225 (MNU50_00225) - 52866..54122 (+) 1257 WP_000566670.1 DUF3578 domain-containing protein -
  MNU50_RS00230 (MNU50_00230) - 54537..54776 (+) 240 WP_001282728.1 hypothetical protein -
  MNU50_RS00235 (MNU50_00235) - 54808..55482 (-) 675 WP_001106057.1 IS6-like element IS257 family transposase -
  MNU50_RS00240 (MNU50_00240) - 55566..55907 (+) 342 WP_001797647.1 hydroxymethylglutaryl-CoA synthase -
  MNU50_RS00245 (MNU50_00245) - 56824..57567 (+) 744 WP_000958858.1 glycerophosphoryl diester phosphodiesterase -
  MNU50_RS00250 (MNU50_00250) - 57664..58092 (+) 429 WP_000872606.1 MaoC family dehydratase -
  MNU50_RS00255 (MNU50_00255) mecA 58138..60147 (-) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  MNU50_RS00260 (MNU50_00260) - 60244..61230 (+) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  MNU50_RS00265 (MNU50_00265) - 61202..61462 (+) 261 WP_001549961.1 type I restriction enzyme endonuclease domain-containing protein -
  MNU50_RS00270 (MNU50_00270) - 61729..62928 (+) 1200 WP_071813256.1 IS110-like element ISSep2 family transposase -
  MNU50_RS00275 (MNU50_00275) - 63025..64621 (-) 1597 Protein_52 IS1182 family transposase -
  MNU50_RS00280 (MNU50_00280) - 64673..65179 (-) 507 WP_001092189.1 DUF1643 domain-containing protein -
  MNU50_RS00285 (MNU50_00285) - 65194..65505 (-) 312 WP_000700851.1 DUF960 family protein -
  MNU50_RS00290 (MNU50_00290) - 65592..65942 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MNU50_RS00295 (MNU50_00295) ccrB 66464..68092 (-) 1629 WP_001186608.1 recombinase family protein Machinery gene
  MNU50_RS00300 (MNU50_00300) ccrA 68114..69463 (-) 1350 WP_000815640.1 recombinase family protein Machinery gene
  MNU50_RS00305 (MNU50_00305) - 69697..71484 (-) 1788 WP_000122620.1 DUF927 domain-containing protein -
  MNU50_RS00310 (MNU50_00310) - 71484..71774 (-) 291 WP_001036438.1 hypothetical protein -
  MNU50_RS00315 (MNU50_00315) - 71913..72962 (+) 1050 WP_000613248.1 hypothetical protein -
  MNU50_RS00320 (MNU50_00320) - 73415..74905 (+) 1491 WP_000554504.1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52663.34 Da        Isoelectric Point: 9.9639

>NTDB_id=662524 MNU50_RS00300 WP_000815640.1 68114..69463(-) (ccrA) [Staphylococcus epidermidis strain TSM-50]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH
NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV
CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHIIQ
NIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=662524 MNU50_RS00300 WP_000815640.1 68114..69463(-) (ccrA) [Staphylococcus epidermidis strain TSM-50]
ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGTCGCAAAGATAATCGTAGTGGGT
ATCGACAAATAACACAATTAATTCAACAAGGACAGTGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
CTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACGTACCATGTTCATATCTTAAGCGTACATGATGGTTACTTTGA
TATGGATCAAGCTTTCGACCGACTCAAGCTTAATATCTTCATCAGTTTAGCCGAACTTGAATCGGATAACATTGGAGAAC
AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACACATGCACCTTTTGGTTACGAATATCAC
AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGTCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATCATCA
ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGCCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA
TATGAGCAAGCGCAGAGACTTCGATTGCAAAAACAAACCAAACAGACACCTTCGGATAATCAACTCAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA
AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG
TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA
CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA
GAGAGCAAACACAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAACACATCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCCTATATTGAAACCATTCACATTACGAAAGATAAAAATCT
TATAGGAATCTATTTCAAAAATGAACCACTCAATATTGTCAATCAAACCATGCAATCATCGATTGCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(169-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus N315

97.55

100

0.976
  ccrA Staphylococcus aureus COL

75.947

100

0.759