Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG233_RS27515 Genome accession   NZ_CP108536
Coordinates   6319517..6320509 (-) Length   330 a.a.
NCBI ID   WP_275495336.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6314517..6325509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS27495 (OG233_27505) - 6314993..6316123 (-) 1131 WP_327270171.1 FAD-dependent oxidoreductase -
  OG233_RS27500 (OG233_27510) - 6316146..6317108 (-) 963 WP_327270172.1 cyclase family protein -
  OG233_RS27505 (OG233_27515) - 6317105..6318106 (-) 1002 WP_275495334.1 fumarylacetoacetate hydrolase family protein -
  OG233_RS27510 (OG233_27520) - 6318234..6319163 (+) 930 WP_275495335.1 LysR family transcriptional regulator -
  OG233_RS27515 (OG233_27525) cytR 6319517..6320509 (-) 993 WP_275495336.1 LacI family DNA-binding transcriptional regulator Regulator
  OG233_RS27520 (OG233_27530) - 6320844..6322568 (+) 1725 WP_327270173.1 discoidin domain-containing protein -
  OG233_RS27525 (OG233_27535) - 6322783..6324153 (+) 1371 WP_327270174.1 DUF1996 domain-containing protein -
  OG233_RS27530 (OG233_27540) - 6324129..6324698 (+) 570 WP_327270175.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35241.30 Da        Isoelectric Point: 9.3597

>NTDB_id=662494 OG233_RS27515 WP_275495336.1 6319517..6320509(-) (cytR) [Streptomyces sp. NBC_01218]
MRRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVQELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELENAGKRLVLMLAESDRSRTRVVRYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAQDVP
YVALDNAGGAALAVRHLLERGRRRIATITGPLELYEARERLDGYRRTLRDTGRRSIVALGDFTRASGAEAMRQLLEDDPG
LDAVFAANDLMAIGALRTLHRAGRRVPEDVAVVGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLGLIDGGPATPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=662494 OG233_RS27515 WP_275495336.1 6319517..6320509(-) (cytR) [Streptomyces sp. NBC_01218]
ATGAGACGCCCCACGCTCGAAGTGGTCGCCGCGCGGGCGGGCGTGTCCAAGTCGAGCGTCTCCCGCGTCATCAACGGCGA
GACGACGGTCGCCCCCCAGATCAGGGACGTCGTCATGCGTGCCGTCCAGGAGCTGGGCTACGTGCCCAATGGAGCGGCAC
GCAATCTCGTCACCCGGCGTACGGACACCCTTGCCGTCGTGGTCTCCGACCCGCCGCAAGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGGGCCGTCAGCAGGGAGCTGGAGAACGCGGGCAAACGGCTCGTACTCATGCTCGCGGAATC
GGACCGGAGCCGGACCAGGGTGGTGCGGTACATCGCGGGCGGGCACGTGGACGGTGTGCTCCTCGTCGCCCTGCACGGTA
CGGATCCGCTGCCGGCCGCGCTGGCCCGGCAGGGCCTGCCCGTCGTGTCGTTCAACCGCACCTCCGCACAGGACGTCCCG
TACGTGGCGCTGGACAACGCCGGTGGAGCGGCCCTGGCCGTGCGTCATCTCCTGGAGCGCGGGCGGCGCCGGATCGCTAC
CATCACCGGACCGCTCGAACTGTACGAGGCGCGCGAACGTCTCGACGGCTACCGCCGGACTCTGCGTGACACCGGTCGGC
GCTCCATCGTGGCGCTGGGCGACTTCACCCGGGCCTCCGGCGCCGAGGCCATGCGTCAGCTCCTGGAGGACGATCCGGGT
CTCGACGCGGTGTTCGCGGCCAACGACCTGATGGCGATCGGGGCCCTGCGCACCCTTCACCGCGCGGGCCGACGGGTCCC
CGAGGACGTGGCGGTCGTCGGCTTCGACGACATCGAGGCCGCGTCCTACACCAGCCCGGCGCTGACCTCGGTGCGCAGCC
CGATGGCCGACCAGGCGACCGCCGCCGTCCACCTGCTCCTCGGCCTGATCGACGGGGGCCCGGCCACGCCGGTGATCATG
CCGAACGAACTCGTGGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.503

100

0.364