Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG233_RS21790 Genome accession   NZ_CP108536
Coordinates   5019928..5021661 (-) Length   577 a.a.
NCBI ID   WP_275494336.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5014928..5026661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS21780 (OG233_21775) - 5016831..5017901 (+) 1071 WP_275496163.1 RNA polymerase sigma factor -
  OG233_RS21785 (OG233_21780) rcrQ 5018003..5019928 (-) 1926 WP_275494335.1 ABC transporter ATP-binding protein Regulator
  OG233_RS21790 (OG233_21785) rcrP 5019928..5021661 (-) 1734 WP_275494336.1 ABC transporter ATP-binding protein Regulator
  OG233_RS21795 (OG233_21790) - 5021782..5023254 (-) 1473 WP_327269600.1 FGGY family carbohydrate kinase -
  OG233_RS21800 (OG233_21795) - 5023390..5023695 (-) 306 WP_275494338.1 YtxH domain-containing protein -
  OG233_RS21820 (OG233_21815) - 5024713..5025539 (+) 827 WP_327270687.1 IS5 family transposase -
  OG233_RS21825 (OG233_21820) - 5025548..5025871 (+) 324 WP_327269601.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62599.88 Da        Isoelectric Point: 6.9614

>NTDB_id=662482 OG233_RS21790 WP_275494336.1 5019928..5021661(-) (rcrP) [Streptomyces sp. NBC_01218]
MLIKLLRSFLGPYRRPILLLVVLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILEYGGVMIAVSVLQVVCNIGAVYYGA
RTASALGRDLRAAVFDRVQSFSAREVARFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGVVMALGQDVPLSAV
LLAVVPLLGIAVSLIVRKMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDGYEVKRFRGANTELTDVAVSTGRLMAL
MFPVVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIDEVLETDSSVVP
PAAPVTELRRHGHLELRGAQFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVASNLRYGNPDATDEELWHALEVAQAKEFVERLENGLNAPIAQGGTNVSGGQRQRL
AIARTLVRKPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHRELMDGN
GTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=662482 OG233_RS21790 WP_275494336.1 5019928..5021661(-) (rcrP) [Streptomyces sp. NBC_01218]
GTGCTCATAAAACTGCTCAGGTCCTTCCTGGGCCCCTACCGAAGGCCGATCCTGCTGCTGGTGGTCCTCCAGCTGCTGCA
GACCTGCGCCTCGCTCTACCTGCCCAGCCTCAACGCCGACATCATCGACAACGGCGTGGTGAAGGGCGACACGGGTTACA
TCCTGGAGTACGGCGGTGTGATGATCGCCGTCAGCGTCCTCCAGGTCGTCTGCAACATCGGCGCGGTCTACTACGGGGCG
CGGACGGCGTCCGCGCTCGGCCGTGACCTGCGGGCCGCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGC
CCGGTTCGGGGCCCCCTCGCTGATCACCCGTACGACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGTGTCGGCGGGGTCGTCATGGCACTGGGCCAGGACGTGCCGCTCTCCGCCGTG
CTGCTGGCCGTGGTGCCGCTGCTGGGGATCGCGGTGAGCCTGATCGTCCGGAAGATGCGGCCGCTGTTCCGCACCATGCA
GACGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTAACCGGGTGATCCGTGCCTTCGTGCGCGACG
GCTACGAGGTGAAGCGGTTCCGGGGCGCGAACACCGAGCTGACGGACGTGGCGGTCTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACCGTGGTGAACGTGTCCTCGGTCGCGGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCGGAGCGCATCGACGAGGTCCTGGAGACCGACTCCAGCGTGGTGCCG
CCCGCGGCCCCGGTGACGGAGCTGCGGCGGCACGGTCATCTGGAGCTGCGCGGCGCCCAGTTCCGTTACCCGGGTGCCGA
GGAGCCGGTGCTTCGCTCGGTGGACCTGGTGGCGCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTGGGGCTCGTACCGCGGCTGTTCGACGTGACGGAGGGCGAGGTTCTCGTCGACGGTACGGACGTGCGG
ACGCTGGACCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTGGCGTC
GAACCTGCGCTACGGGAACCCGGACGCGACGGACGAGGAGCTCTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTGGAGAACGGTCTGAACGCGCCGATCGCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGTCTG
GCGATCGCGCGGACGCTGGTGCGCAAGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCGGCCGGGAGACGGCGGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGATGCCGACCGGATCCTCGTCCTGGACGAGGGGCGGGTCGTGGGAACGGGCACCCATCGCGAGCTGATGGACGGCAAT
GGGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.172

100

0.404