Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG233_RS21785 Genome accession   NZ_CP108536
Coordinates   5018003..5019928 (-) Length   641 a.a.
NCBI ID   WP_275494335.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5013003..5024928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS21770 (OG233_21765) - 5013955..5014506 (-) 552 WP_327269598.1 hypothetical protein -
  OG233_RS21775 (OG233_21770) dnaG 5014618..5016540 (+) 1923 WP_327269599.1 DNA primase -
  OG233_RS21780 (OG233_21775) - 5016831..5017901 (+) 1071 WP_275496163.1 RNA polymerase sigma factor -
  OG233_RS21785 (OG233_21780) rcrQ 5018003..5019928 (-) 1926 WP_275494335.1 ABC transporter ATP-binding protein Regulator
  OG233_RS21790 (OG233_21785) rcrP 5019928..5021661 (-) 1734 WP_275494336.1 ABC transporter ATP-binding protein Regulator
  OG233_RS21795 (OG233_21790) - 5021782..5023254 (-) 1473 WP_327269600.1 FGGY family carbohydrate kinase -
  OG233_RS21800 (OG233_21795) - 5023390..5023695 (-) 306 WP_275494338.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69120.69 Da        Isoelectric Point: 5.7566

>NTDB_id=662481 OG233_RS21785 WP_275494335.1 5018003..5019928(-) (rcrQ) [Streptomyces sp. NBC_01218]
MAGPGGRMMAGAPVGKSADFKGSAKRLMRRFSAEKSSLYLMLLAGVLSVGLSVVGPKILGAATDLIFAGVVGRGMPEGTT
KAQAIQSLRDKGDGTLADLLSGVDFTPGRGIDFTAVGHVLLAVLLVYIGAGLLMLVSTRLSIRVINRVVFQLREDLQTKL
SRLPLSYFDKKQRGEVLSRATNDIDNIAQTLQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVASRVGKR
SQPQFVRQWKVTGELNAHIEEMYTGHNLVKVFGRQDESAQQFAEQNDALHEAVFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFELLDAEEQGADPADAQRPSELLGRVRLEK
VSFRYDPEKPLIEDLSLSVDPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVARMSRDELRSGIGMVLQDTW
LFGGSIAENIAYGAAREVTREEIEEAARAAHADRFVRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGSHDVLLAAKGAYARLYAAQFAEALAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=662481 OG233_RS21785 WP_275494335.1 5018003..5019928(-) (rcrQ) [Streptomyces sp. NBC_01218]
ATGGCCGGGCCGGGCGGACGGATGATGGCCGGGGCGCCCGTGGGGAAGTCCGCGGACTTCAAGGGGTCGGCCAAGCGGTT
GATGCGGCGGTTCAGCGCGGAGAAGTCCTCGCTGTACCTGATGCTGCTCGCCGGTGTGCTGAGCGTGGGGCTGTCGGTGG
TCGGGCCGAAGATCCTGGGTGCGGCGACGGACCTGATCTTCGCGGGGGTCGTCGGGCGGGGCATGCCCGAGGGCACCACG
AAGGCGCAGGCGATCCAGAGCCTGCGGGACAAGGGCGACGGCACTCTCGCCGATCTGCTCTCCGGGGTGGATTTCACCCC
GGGGCGGGGCATCGACTTCACCGCGGTGGGGCATGTCCTGCTGGCGGTGCTGCTGGTCTACATCGGGGCCGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTCATCAACCGGGTGGTCTTCCAGCTCCGCGAGGACCTGCAGACGAAGTTG
TCGCGGCTGCCGCTGTCGTACTTCGACAAGAAGCAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACATCGACAACAT
CGCGCAGACCCTGCAGCAGACGATGGGGCAGCTGATCAACTCGCTGCTGACCATCGTGGGCGTGCTGGTCATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTGGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCCTCGCGGGTGGGCAAGCGT
TCGCAGCCCCAGTTCGTGCGGCAGTGGAAGGTCACCGGCGAACTCAACGCCCACATCGAGGAGATGTACACCGGCCACAA
CCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGTTGCACGAGGCCGTGT
TCAGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCGGTG
GTCGGCGGGCTGCGGGTGGCGTCGGGCGCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTATCGCGTCGGCCGAGCGGGTCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGGGCGGACCCGGCCGACGCCCAGCGCCCCTCCGAGCTGCTGGGCCGGGTGCGGCTGGAGAAG
GTGTCGTTCCGTTACGACCCGGAGAAGCCGCTCATCGAGGATCTGTCGCTGAGCGTGGACCCGGGGCAGACGGTGGCCAT
CGTGGGGCCGACGGGTGCGGGCAAGACGACGCTCGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGATCA
CCCTGGACGGGGTGGACGTGGCGCGGATGTCGCGCGACGAGCTGCGGTCCGGGATAGGGATGGTCCTCCAGGACACCTGG
CTGTTCGGCGGTTCGATCGCGGAGAACATCGCGTACGGCGCCGCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCCGC
CCGGGCGGCGCACGCGGACCGGTTCGTCCGTACGCTCCCCGAGGGGTACGACACGGTCATCGACGACGAGGGTTCCGGGG
TCAGCGCGGGCGAGAAGCAGTTGATCACCATCGCGCGGGCGTTCCTCTCCGACCCGGTGATCCTGGTGCTGGACGAGGCG
ACCAGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGGCGGACCAGCTTCGT
GATCGCGCACCGGCTCTCCACGATCCGGGACGCCGACGTGATCCTGGTGATGGAGAACGGTTCCATCGTGGAGCAGGGTT
CGCACGACGTGCTGCTGGCGGCGAAGGGCGCGTACGCGCGGCTCTACGCGGCGCAGTTCGCCGAGGCGCTGGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(57-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.75

82.371

0.36