Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG233_RS15620 Genome accession   NZ_CP108536
Coordinates   3618386..3619510 (-) Length   374 a.a.
NCBI ID   WP_275493219.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3613386..3624510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS15610 (OG233_15615) gyrB 3615241..3617310 (-) 2070 WP_275493218.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG233_RS15615 (OG233_15620) - 3617763..3618257 (-) 495 WP_275496079.1 DciA family protein -
  OG233_RS15620 (OG233_15625) recF 3618386..3619510 (-) 1125 WP_275493219.1 DNA replication/repair protein RecF Machinery gene
  OG233_RS15625 (OG233_15630) gnd 3619549..3620427 (-) 879 WP_275493220.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG233_RS15630 (OG233_15635) dnaN 3620584..3621714 (-) 1131 WP_275493221.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40829.45 Da        Isoelectric Point: 6.8620

>NTDB_id=662468 OG233_RS15620 WP_275493219.1 3618386..3619510(-) (recF) [Streptomyces sp. NBC_01218]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVVRASVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVVGILRTVLFAPEDLALVKGDPGERRRFLDELVTARTPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDMSTLDVWDQHLARVGAELLAQRLDLIAVLQPLTDKAYGDVAPGGGPVGLEYRSSVDENPA
RTRDELYEQVLAALAGVRKQEIERGVTLVGPHRDDLLLGLRQMPAKGYASHGESWSYALALRLASYELLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPAEQVLVTAAVDDDVPGVLAGTRYEVAAGEVTRL

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=662468 OG233_RS15620 WP_275493219.1 3618386..3619510(-) (recF) [Streptomyces sp. NBC_01218]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTTCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGGCCAACGGCCAGGGCAAGACCAACCTCGTCGAAGCGGTCGGCTACCTCGCCACCCTCGGCAGCCACCGCG
TCTCCTCGGACGCCCCCCTGGTGCGGATGGGGGCCGAGCGGGCCGTCGTCCGGGCCTCGGTGACCCAGGGCGAGCGCTCC
CAGCTGATCGAACTGGAGCTGAACCCGGGCCGCGCCAACCGCGCCCGGATCAACCGCTCCTCGCAGGTACGGCCCCGTGA
CGTGGTGGGCATCCTGCGGACCGTGCTCTTCGCCCCCGAGGACCTGGCGCTGGTCAAGGGCGACCCCGGGGAGCGGCGCC
GGTTCCTCGACGAACTGGTCACCGCCCGCACACCCCGGATGGCGGGTGTCCGCTCCGACTACGAGCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCGATGGCCCGCCGCCACGGTGGCCGCTCCATGGACATGTCCACGCTCGACGTCTG
GGACCAGCACCTGGCCCGGGTCGGAGCCGAACTGCTCGCGCAGCGGCTCGACCTGATCGCCGTCCTCCAGCCGCTCACCG
ACAAGGCGTACGGCGACGTCGCACCGGGTGGCGGCCCGGTGGGCCTGGAGTACCGCAGCTCGGTGGACGAGAACCCGGCC
CGCACCCGGGACGAGCTGTACGAGCAGGTGCTGGCCGCGCTCGCCGGCGTACGGAAGCAGGAGATCGAGCGCGGGGTGAC
CCTGGTCGGTCCGCACCGGGACGACCTGCTGCTGGGCCTGCGCCAGATGCCCGCGAAGGGGTACGCGAGCCACGGCGAGT
CATGGTCGTACGCGCTGGCGCTGCGGCTCGCCTCGTACGAGCTGCTGCGGGCGGAGGGCAACGAACCGGTGCTCGTCCTC
GACGACGTCTTCGCCGAGCTGGACGCGCGGCGCCGCGAGCGCCTCGCGGAGCTGGTGGCGCCGGCCGAGCAGGTACTGGT
GACGGCCGCCGTGGACGACGACGTGCCGGGGGTCCTCGCGGGCACCCGGTACGAGGTCGCGGCCGGCGAGGTGACCCGGC
TGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361