Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG233_RS12635 Genome accession   NZ_CP108536
Coordinates   2998964..2999962 (-) Length   332 a.a.
NCBI ID   WP_275492664.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2993964..3004962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS12625 (OG233_12630) - 2996237..2997406 (-) 1170 WP_275492662.1 MFS transporter -
  OG233_RS12630 (OG233_12635) - 2998041..2998787 (+) 747 WP_327268639.1 DUF6227 family protein -
  OG233_RS12635 (OG233_12640) rpoS 2998964..2999962 (-) 999 WP_275492664.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG233_RS12640 (OG233_12645) - 3000111..3000641 (+) 531 WP_275492665.1 GNAT family N-acetyltransferase -
  OG233_RS12645 (OG233_12650) - 3000724..3001506 (-) 783 WP_275492666.1 class III extradiol ring-cleavage dioxygenase -
  OG233_RS12650 (OG233_12655) - 3001662..3002174 (+) 513 WP_327268640.1 MarR family transcriptional regulator -
  OG233_RS12655 (OG233_12660) - 3002268..3003803 (-) 1536 WP_275492668.1 MFS transporter -
  OG233_RS12660 (OG233_12665) - 3004179..3004835 (-) 657 WP_327268641.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37032.65 Da        Isoelectric Point: 5.2432

>NTDB_id=662460 OG233_RS12635 WP_275492664.1 2998964..2999962(-) (rpoS) [Streptomyces sp. NBC_01218]
MATRAVARRSSATGGTDRARSVRGGSGEIADRDLVGMYLDEIARTPLLDAAKEVELSQAIEAGVYARKILDGEVESDAGG
AKPQELEALYAESERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHAEIAAELDSNAERVGNVLDWARDPVSLNMPVDDDGDTQF
GDLLEDTSAVSPEQSVMSLLRSEELEELIGKLDNRTASIIRMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALVELK
RMAHDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=662460 OG233_RS12635 WP_275492664.1 2998964..2999962(-) (rpoS) [Streptomyces sp. NBC_01218]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCGTCCGCCACCGGTGGGACCGACCGGGCCCGCAGTGTTCGCGGTGGAAGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGAACGCCCCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCGCAGGCCATCGAGGCCGGCGTCTACGCCCGCAAGATTCTCGACGGTGAGGTCGAGAGCGACGCCGGCGGA
GCGAAGCCGCAGGAGCTGGAAGCGCTGTACGCCGAGAGCGAGCGCGCCAAGGACGTCTTCATCCGCTCCAACCTCCGTCT
CGTCGTCGCCGTCGCCCGTCGCTACCCGCGCGCGGGTCTGCCGCTGCTCGACCTCATCCAGGAGGGGAACGCCGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCCACCTGGTGGATCCGCCAGGCGATC
ACCCGCTCGATAGCGGACCAGTCCCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCGCCGGGT
GCAGCGCGAGTTCAACCGCGAGCACGGGCGCGACCCGGAGCACGCCGAGATCGCGGCGGAGCTGGACTCCAACGCCGAGC
GCGTGGGCAACGTCCTGGACTGGGCCCGCGACCCGGTCAGCCTCAACATGCCGGTGGACGACGACGGCGACACGCAATTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCACCGGAGCAGTCCGTCATGTCGCTGCTGCGCAGCGAGGAGCTGGAGGA
GCTGATCGGCAAGCTCGACAACCGCACCGCCTCCATCATCCGGATGCGGTACGGCATCGAGGACGGCCGGGAGCGGACGC
TGACCGAAGTGGGCAAGCAGCACGGTCTGACACGTGAGCGGATCCGCCAGATCGAGAAGCACGCATTGGTCGAATTGAAG
CGAATGGCTCACGACACGGGCTTTGACGCTGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.361

0.361