Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG233_RS07325 Genome accession   NZ_CP108536
Coordinates   1761438..1762235 (+) Length   265 a.a.
NCBI ID   WP_275491727.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1756438..1767235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS07315 (OG233_07325) - 1757330..1760224 (-) 2895 WP_275491725.1 vitamin B12-dependent ribonucleotide reductase -
  OG233_RS07320 (OG233_07330) nrdR 1760385..1760891 (-) 507 WP_275491726.1 transcriptional regulator NrdR -
  OG233_RS07325 (OG233_07335) dinR/lexA 1761438..1762235 (+) 798 WP_275491727.1 transcriptional repressor LexA Regulator
  OG233_RS07330 (OG233_07340) - 1762380..1764350 (-) 1971 WP_275491728.1 ATP-dependent DNA helicase -
  OG233_RS07335 (OG233_07345) - 1764389..1766287 (-) 1899 WP_327268106.1 IucA/IucC family siderophore biosynthesis protein -
  OG233_RS07340 (OG233_07350) - 1766348..1767076 (-) 729 WP_327268107.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28799.56 Da        Isoelectric Point: 7.4761

>NTDB_id=662444 OG233_RS07325 WP_275491727.1 1761438..1762235(+) (dinR/lexA) [Streptomyces sp. NBC_01218]
MTTSADSATFTARDHRSPSRPEPVHAMNDSVTNPDGPEPPRAARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPISQQTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=662444 OG233_RS07325 WP_275491727.1 1761438..1762235(+) (dinR/lexA) [Streptomyces sp. NBC_01218]
GTGACCACCAGCGCCGACAGTGCCACGTTCACTGCCCGGGACCACCGCTCTCCGAGCCGACCTGAGCCGGTGCACGCCAT
GAATGACTCTGTCACGAACCCGGACGGGCCGGAGCCCCCCAGGGCCGCGCGCTCCCTGCCGGGGCGACCTCCCGGTATCC
GGGCCGACAGTTCGGGCCTCACCGACCGGCAGCGACGGGTCATCGAGGTCATCCGCGACTCGGTGCAGCGCCGGGGGTAC
CCGCCGTCGATGCGGGAGATCGGCCAGGCGGTCGGCCTCTCCAGCACCTCGTCCGTGGCGCATCAGCTGATGGCCCTGGA
GCGCAAGGGTTTCCTGCGCAGGGACCCGCACCGTCCGCGTGCGTACGAAGTCCGGGGCTCGGACCAGCCCATCTCGCAGC
AGACGGACACCACCGGGAAGCCCGCCGCCTCGTACGTCCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCG
GAGGAGTCGGTGGAGGACGTCTTCCCGCTCCCGCGCCAACTGGTCGGGGACGGTGAGCTCTTCGTACTCAAGGTCGTCGG
CGACTCCATGATCGAGGCCGCGATCTGTGACGGTGACTGGGTCACCGTACGCCGTCAGCCGGTCGCCGAGAACGGCGACA
TCGTCGCCGCGATGCTGGAGGGCGAGGCGACGGTCAAGCGGTTCCGCCGCGAGGACGGCCACGTATGGCTCCTCCCGCAC
AACGCCGCGTACCAGCCGATCCCCGGTGACGAGGCGACCATTCTCGGCAAGGTCGTGGCCGTGCTCCGGCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

79.245

0.366