Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG345_RS28235 Genome accession   NZ_CP108531
Coordinates   6328327..6330060 (-) Length   577 a.a.
NCBI ID   WP_328948477.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01220     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6323327..6335060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG345_RS28225 (OG345_28185) - 6325186..6326310 (+) 1125 WP_306070007.1 RNA polymerase sigma factor -
  OG345_RS28230 (OG345_28190) rcrQ 6326396..6328327 (-) 1932 WP_219572589.1 ABC transporter ATP-binding protein Regulator
  OG345_RS28235 (OG345_28195) rcrP 6328327..6330060 (-) 1734 WP_328948477.1 ABC transporter ATP-binding protein Regulator
  OG345_RS28240 (OG345_28200) - 6330228..6331673 (-) 1446 WP_328948476.1 FGGY family carbohydrate kinase -
  OG345_RS28245 (OG345_28205) - 6331746..6332045 (-) 300 WP_219572595.1 YtxH domain-containing protein -
  OG345_RS28265 (OG345_28225) - 6333124..6334614 (+) 1491 WP_363140543.1 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62757.77 Da        Isoelectric Point: 5.3855

>NTDB_id=662419 OG345_RS28235 WP_328948477.1 6328327..6330060(-) (rcrP) [Streptomyces sp. NBC_01220]
MLIKLLRAYLRPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYIVQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVNPVRELTVHGHLEVRGADFRYPGAEEPVLRSVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALETAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETRGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=662419 OG345_RS28235 WP_328948477.1 6328327..6330060(-) (rcrP) [Streptomyces sp. NBC_01220]
GTGCTCATAAAACTCCTGCGGGCCTATCTCCGCCCGTACAAGAAACCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGCAGGGGGACACGGGCTACA
TCGTCCAGTACGGCGGCGTCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGAGCC
CGCACCGCGTCCGCGCTCGGGCGCGACGTACGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGCTCGG
CCGGTTCGGCGCTCCCTCGCTGATCACCCGTACGACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTA
CTGCTCGCCGTGGTGCCGGTCCTCGGCGTCGCGGTGAGCCTGATCGTGCGGAAGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTGCGGGACG
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGACGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCTCCGTGGTGCCG
CCGGTGAACCCGGTGCGGGAGCTCACGGTCCACGGGCATCTGGAGGTACGCGGTGCGGACTTCCGCTACCCCGGTGCCGA
GGAACCGGTGCTGCGCTCCGTGGATCTGGTGGCGCGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGACTCGTACCGCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTGCGG
ACGCTGGATCCGGTTCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGACCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGGCTCGACGCACCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTGGACTACGCCACGGA
CGCGGCGCTGCGTGCGGCGCTGCTGCGGGAGACGCGCGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCGACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCGTCGTCGGTTCCGGCAGCCACCACGAACTGATGGACGGCAAT
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.7

94.107

0.383