Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG345_RS28230 Genome accession   NZ_CP108531
Coordinates   6326396..6328327 (-) Length   643 a.a.
NCBI ID   WP_219572589.1    Uniprot ID   A0ABY9IUN3
Organism   Streptomyces sp. NBC_01220     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6321396..6333327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG345_RS28220 (OG345_28180) dnaG 6323085..6324989 (+) 1905 WP_363140544.1 DNA primase -
  OG345_RS28225 (OG345_28185) - 6325186..6326310 (+) 1125 WP_306070007.1 RNA polymerase sigma factor -
  OG345_RS28230 (OG345_28190) rcrQ 6326396..6328327 (-) 1932 WP_219572589.1 ABC transporter ATP-binding protein Regulator
  OG345_RS28235 (OG345_28195) rcrP 6328327..6330060 (-) 1734 WP_328948477.1 ABC transporter ATP-binding protein Regulator
  OG345_RS28240 (OG345_28200) - 6330228..6331673 (-) 1446 WP_328948476.1 FGGY family carbohydrate kinase -
  OG345_RS28245 (OG345_28205) - 6331746..6332045 (-) 300 WP_219572595.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69129.47 Da        Isoelectric Point: 5.0427

>NTDB_id=662418 OG345_RS28230 WP_219572589.1 6326396..6328327(-) (rcrQ) [Streptomyces sp. NBC_01220]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFAAEKATLYVMLVAVALSVALSVVGPKILGKATDLVFAGVVGRGMDAGT
TKEQAVEGLRKGNSGLADMLSKVDFTPGQGMDFDAIGRVLLVALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERIFELLDAEEQDADPSKGEGEFPGELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVTREQVEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAHGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=662418 OG345_RS28230 WP_219572589.1 6326396..6328327(-) (rcrQ) [Streptomyces sp. NBC_01220]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCTCCGACCGACCGGTCCATGGACTTCAAGGGCTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGGCGGAGAAGGCCACCCTGTACGTGATGCTGGTGGCCGTCGCGCTGAGCGTGGCGCTGTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGAGTCGTCGGCCGGGGGATGGACGCGGGGACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGGGCAACAGCGGTCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGGCAGGGCATGGACTTCGACGCGATCGGCCGGGTGCTGCTCGTGGCACTGGCCGTGTACGTCGGTGCGGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAGCTGCGTGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGGCAGCTGATCAACTCGCTGCTGACCATCGTCGGCGTGCTCGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGGCGAAGGTCGGCAAGCGC
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATCGCCGTC
GTCGGCGGGCTGCGGGTCGCCTCGGGCGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGATCGCCTCGGCGGAACGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCGTCGAAGGGCGAGGGCGAGTTCCCCGGGGAGCTGCGCGGCAGCGTGTCCCTG
GAGAACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAGTGTCGAGCCGGGTCACACGGT
CGCGATCGTCGGCCCGACCGGTGCCGGCAAGACGACGCTGGTCAACCTCCTGATGCGGTTCTACGAGGTGACCGGGGGCC
GGATCGCCCTCGACGGGGTCGACATCGCGAAGATGTCGCGCGACGACCTGCGCTCGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGCGCGTCCGGCGACGTCACCCGGGAGCAGGTCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCCGACGGTTACGACACGGTGATCGACGACGAGGGAT
CCGGTGTCAGCGCCGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACCAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCGGTCTCGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGAGGCACACGGCGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCTCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(57-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.744

97.045

0.386