Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG345_RS09855 Genome accession   NZ_CP108531
Coordinates   2228915..2229709 (+) Length   264 a.a.
NCBI ID   WP_219573501.1    Uniprot ID   A0ABY9IM67
Organism   Streptomyces sp. NBC_01220     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223915..2234709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG345_RS09840 (OG345_09830) - 2224079..2224615 (+) 537 WP_371602696.1 TerD family protein -
  OG345_RS09845 (OG345_09835) - 2224753..2227659 (-) 2907 WP_371602697.1 vitamin B12-dependent ribonucleotide reductase -
  OG345_RS09850 (OG345_09840) nrdR 2227825..2228337 (-) 513 WP_148021323.1 transcriptional regulator NrdR -
  OG345_RS09855 (OG345_09845) dinR/lexA 2228915..2229709 (+) 795 WP_219573501.1 transcriptional repressor LexA Regulator
  OG345_RS09860 (OG345_09850) - 2229792..2231762 (-) 1971 WP_219573502.1 ATP-dependent DNA helicase -
  OG345_RS09865 (OG345_09855) - 2231813..2233714 (-) 1902 WP_363142284.1 IucA/IucC family siderophore biosynthesis protein -
  OG345_RS09870 (OG345_09860) - 2233775..2234482 (-) 708 WP_363142283.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28622.39 Da        Isoelectric Point: 6.9854

>NTDB_id=662374 OG345_RS09855 WP_219573501.1 2228915..2229709(+) (dinR/lexA) [Streptomyces sp. NBC_01220]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=662374 OG345_RS09855 WP_219573501.1 2228915..2229709(+) (dinR/lexA) [Streptomyces sp. NBC_01220]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAGCCCGCGCGCCCAGCGCGCTCGCTTCCCGGACGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAAGTCATCCGGGACTCCGTACAACGGCGGGGTTACCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGCACGTCCTCCGTCGCACATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCCCACCGCCCGCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCCAGCACACAGCCCA
CGGACACCACCGGGAAGCCCGCGGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGTGGGCCGATCCTCGCCGAG
GAATCGGTGGAGGACGTGTTCCCCCTCCCCCGCCAACTGGTCGGGGACGGAGAGCTGTTCGTGCTGAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGCGACGGGGACTGGGTCACCGTACGACGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371