Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG345_RS02145 Genome accession   NZ_CP108531
Coordinates   502999..504021 (+) Length   340 a.a.
NCBI ID   WP_306105656.1    Uniprot ID   A0ABY9IJ51
Organism   Streptomyces sp. NBC_01220     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 497999..509021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG345_RS02130 (OG345_02115) - 499299..500159 (+) 861 WP_329538999.1 methyltransferase domain-containing protein -
  OG345_RS02135 (OG345_02120) - 500105..501040 (-) 936 WP_371602006.1 helix-turn-helix domain-containing protein -
  OG345_RS02140 (OG345_02125) - 501108..502496 (-) 1389 WP_329539001.1 cellulase family glycosylhydrolase -
  OG345_RS02145 (OG345_02130) cytR 502999..504021 (+) 1023 WP_306105656.1 LacI family DNA-binding transcriptional regulator Regulator
  OG345_RS02150 (OG345_02135) - 504422..505513 (+) 1092 WP_329539005.1 lytic polysaccharide monooxygenase -
  OG345_RS02155 (OG345_02140) - 505629..508100 (-) 2472 WP_371602007.1 glycoside hydrolase family 3 protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36848.08 Da        Isoelectric Point: 6.8878

>NTDB_id=662359 OG345_RS02145 WP_306105656.1 502999..504021(+) (cytR) [Streptomyces sp. NBC_01220]
MLKRGSGTPTLEEVAALAGVGRGTVSRVINNASGVKASTRRAVQRAIEELDYVPNLAARSLAGRRADAVALVMTKTDWRL
FGAPFFSEVVRAVGDALTEADVQLLLTLVRTDAERQRLVKYVRGGRIDGALLMSVRAEDRLPDMLADAGLPTVLLGRRSD
EERVTYVDADNVGGARAAVAHLARGGRKSIAAITGPPEMYASRCRLRGYREALRDAGLDEVQSLVVQGDFSEVSGRRAMT
GLIERHPEVDGVFASSDSMAAGAVTALHAAGRRVPQDVAVIGFDDFELAEQTEPPLTTVRQPMEEIGRTMVRLLLEEMDQ
PQVAWRHVILRTQLVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=662359 OG345_RS02145 WP_306105656.1 502999..504021(+) (cytR) [Streptomyces sp. NBC_01220]
ATGCTGAAGCGAGGTTCCGGCACACCGACGCTGGAGGAAGTGGCCGCGCTTGCCGGAGTGGGGCGGGGCACGGTCTCCCG
GGTGATCAACAACGCGTCGGGCGTCAAGGCGTCGACACGCCGCGCCGTGCAACGCGCCATCGAGGAACTGGACTACGTCC
CCAACCTGGCCGCGCGCTCACTGGCGGGCCGGCGCGCGGACGCCGTCGCGCTGGTGATGACGAAGACGGACTGGCGGCTG
TTCGGGGCACCGTTCTTCTCGGAGGTCGTACGGGCGGTCGGGGACGCCCTGACCGAGGCGGACGTGCAACTGCTGCTCAC
GCTCGTCCGCACGGACGCCGAGCGGCAGCGGCTCGTGAAATACGTGCGCGGCGGCCGGATCGACGGGGCTCTGCTCATGT
CCGTACGGGCCGAGGACCGGTTGCCGGACATGCTCGCCGACGCCGGACTGCCCACGGTGCTGCTCGGCCGGCGCTCGGAC
GAGGAACGTGTGACCTATGTGGACGCGGACAACGTAGGTGGCGCAAGGGCCGCGGTCGCCCATCTGGCTCGCGGCGGGCG
GAAATCCATCGCGGCGATCACGGGACCTCCCGAGATGTACGCCTCCCGGTGCAGGCTGCGCGGCTACCGGGAGGCGCTGC
GCGACGCCGGGCTCGACGAGGTCCAGTCCCTGGTCGTACAGGGAGACTTCAGCGAGGTCAGCGGACGGCGGGCGATGACC
GGGCTCATCGAGCGGCACCCGGAGGTCGACGGCGTCTTCGCCTCGTCGGACAGCATGGCCGCCGGGGCGGTTACCGCCCT
GCACGCGGCGGGGCGCCGGGTCCCGCAGGATGTGGCGGTGATCGGCTTCGACGACTTCGAGCTGGCCGAGCAGACCGAAC
CGCCGCTGACGACCGTCCGCCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGACTGCTGCTGGAGGAGATGGACCAG
CCGCAGGTCGCGTGGCGTCATGTGATCCTGCGGACGCAGCTGGTGGTGCGCGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.965

100

0.362