Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG609_RS31765 Genome accession   NZ_CP108529
Coordinates   7054631..7055275 (+) Length   214 a.a.
NCBI ID   WP_327275980.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01224     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7049631..7060275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG609_RS31745 (OG609_31825) - 7051571..7052356 (-) 786 WP_327275978.1 transglycosylase SLT domain-containing protein -
  OG609_RS31750 (OG609_31830) - 7052637..7052830 (-) 194 Protein_6270 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG609_RS31755 (OG609_31835) - 7052912..7053324 (-) 413 Protein_6271 SDR family NAD(P)-dependent oxidoreductase -
  OG609_RS31760 (OG609_31840) - 7053493..7054638 (+) 1146 WP_327275979.1 GAF domain-containing sensor histidine kinase -
  OG609_RS31765 (OG609_31845) vraR 7054631..7055275 (+) 645 WP_327275980.1 response regulator transcription factor Regulator
  OG609_RS31770 (OG609_31850) - 7055419..7055667 (+) 249 WP_327275981.1 chaplin -
  OG609_RS31775 (OG609_31855) - 7055816..7056595 (-) 780 WP_327275982.1 hypothetical protein -
  OG609_RS31780 (OG609_31860) - 7056739..7057536 (+) 798 WP_114243799.1 ABC transporter ATP-binding protein -
  OG609_RS31785 (OG609_31865) - 7057627..7058055 (+) 429 WP_327275983.1 NfeD family protein -
  OG609_RS31790 (OG609_31870) - 7058202..7059131 (+) 930 WP_266745381.1 SPFH domain-containing protein -
  OG609_RS31795 (OG609_31875) - 7059194..7059961 (+) 768 WP_327275984.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23039.31 Da        Isoelectric Point: 5.1629

>NTDB_id=662345 OG609_RS31765 WP_327275980.1 7054631..7055275(+) (vraR) [Streptomyces sp. NBC_01224]
MADKIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARTEELRPDVVLMDIKMPGTDGIEALRKLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQDDAGGGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=662345 OG609_RS31765 WP_327275980.1 7054631..7055275(+) (vraR) [Streptomyces sp. NBC_01224]
GTGGCTGACAAGATCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGTCTGCGTACATTTCTGGAGAT
CCAGGACGATATAGAAGTGGTCGGCGAGGCGTCCGACGGTGCCGAGGGAGTGGCCAGGACCGAGGAGCTCCGCCCCGACG
TCGTCCTGATGGACATCAAGATGCCCGGCACCGACGGGATCGAGGCCCTGCGCAAGCTCCGCGAGCTGGAGAACCCGGCC
AAGGTCCTCATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGAGCCGGAGCCTCCGGTTACGTATA
CAAGGACGTCGACCCGGACGCCCTGGCCGGCGCCATCCGCTCGGTGTACGCGGGCCACGTCCTGCTCCAGCCGGAGGTCG
CGGGAGCCCTGCTCGCCCAGGACGACGCGGGCGGCGGTACGGGCCGGGGAAGCACCCTCACCGAACGGGAGCGGGAGGTG
CTGGGCCTGATCGCCGACGGCCGGTCCAACCGCGAGATCGCGCGGGCACTGGTCCTCTCCGAGAAGACAGTCAAGACACA
CGTCTCGAACATTCTGATGAAGCTGGATCTCTCGGACCGGACCCAGGCGGCCCTCTGGGCCGTCCGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.66

96.262

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407