Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG609_RS11290 Genome accession   NZ_CP108529
Coordinates   2669163..2670374 (-) Length   403 a.a.
NCBI ID   WP_327272696.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2664163..2675374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG609_RS11270 (OG609_11315) - 2664376..2664714 (-) 339 WP_327272692.1 P-II family nitrogen regulator -
  OG609_RS11275 (OG609_11320) - 2664711..2666069 (-) 1359 WP_327272693.1 ammonium transporter -
  OG609_RS11280 (OG609_11325) - 2666441..2667916 (-) 1476 WP_327272694.1 hypothetical protein -
  OG609_RS11285 (OG609_11330) - 2668339..2668998 (+) 660 WP_327272695.1 bifunctional DNA primase/polymerase -
  OG609_RS11290 (OG609_11335) pilA 2669163..2670374 (-) 1212 WP_327272696.1 signal recognition particle-docking protein FtsY Machinery gene
  OG609_RS11295 (OG609_11340) - 2670484..2671884 (+) 1401 WP_327272697.1 cytosine permease -
  OG609_RS11300 (OG609_11345) - 2671943..2672908 (+) 966 WP_327272698.1 LLM class flavin-dependent oxidoreductase -
  OG609_RS11305 (OG609_11350) - 2672985..2674403 (-) 1419 WP_327272699.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42316.26 Da        Isoelectric Point: 4.4406

>NTDB_id=662301 OG609_RS11290 WP_327272696.1 2669163..2670374(-) (pilA) [Streptomyces sp. NBC_01224]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPREEPRRTIEEVGPPSAEAPAEEAP
EAVEPEAPAAPAIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLR
ERVRVLGTRTPEGLRSLLREELLTLLGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEILLVLDATTGQNGLVQARVFAEVVDITGIALTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=662301 OG609_RS11290 WP_327272696.1 2669163..2670374(-) (pilA) [Streptomyces sp. NBC_01224]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCGCCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAAGCCG
AGACGCCGCGCGAGGAACCGCGCCGCACCATTGAGGAGGTCGGTCCCCCTTCGGCCGAGGCTCCCGCCGAGGAAGCCCCC
GAGGCCGTCGAGCCGGAGGCGCCCGCCGCCCCCGCCATCGAGGTGCCCGAGCCCACTGCGGGCCGTCTGGTACGGCTGCG
TGCCCGGCTCGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGACAACCTCGACGAGGACA
CCTGGGAGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGCACCCACACAGGAACTGGTGGAGCGGCTCCGT
GAACGCGTCCGTGTTCTCGGCACCCGTACCCCCGAAGGGCTGCGCTCGCTGCTGCGCGAGGAGCTCCTCACCCTGCTCGG
CACCGACTTCGACCGTGCGGTCAAGACGGAGAGCGGTGTCGACACACCCGGTGTCGTGATGGTCGTCGGTGTCAACGGAA
CCGGCAAGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCCGCCGAC
ACCTTCCGGGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGAGGACCCGAGGG
CGGCGACCCGGCGTCGATCGCCTTCGATGCGGTGAAGGAAGGGATCGCCGAGGGCGCCGATGTCGTCCTCATCGACACCG
CGGGACGGCTGCACACCAAGACCGGACTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGACCGCTC
GACGAGATCCTGCTCGTCCTCGACGCCACGACCGGACAGAATGGTCTGGTGCAGGCCCGGGTGTTCGCCGAGGTCGTCGA
CATCACCGGCATCGCGCTGACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGTGAACTGGGCG
TGCCGGTGAAGCTGGTCGGTCTTGGTGAGGGACCGGACGACCTGGCTCCGTTCGAGCCGGAGGCGTTCGTGGACGCCCTG
ATCGGAGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(204-401)

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.623

90.819

0.387