Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG609_RS10190 Genome accession   NZ_CP108529
Coordinates   2417771..2418565 (+) Length   264 a.a.
NCBI ID   WP_093898912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01224     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2412771..2423565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG609_RS10175 (OG609_10220) - 2412957..2413493 (+) 537 WP_327272519.1 TerD family protein -
  OG609_RS10180 (OG609_10225) - 2413658..2416561 (-) 2904 WP_327272520.1 vitamin B12-dependent ribonucleotide reductase -
  OG609_RS10185 (OG609_10230) nrdR 2416724..2417236 (-) 513 WP_327272521.1 transcriptional regulator NrdR -
  OG609_RS10190 (OG609_10235) dinR/lexA 2417771..2418565 (+) 795 WP_093898912.1 transcriptional repressor LexA Regulator
  OG609_RS10195 (OG609_10240) - 2418649..2420619 (-) 1971 WP_327272522.1 ATP-dependent DNA helicase -
  OG609_RS10200 (OG609_10245) - 2420670..2422574 (-) 1905 WP_327272523.1 IucA/IucC family siderophore biosynthesis protein -
  OG609_RS10205 (OG609_10250) - 2422635..2423441 (-) 807 WP_327272524.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28624.36 Da        Isoelectric Point: 6.9854

>NTDB_id=662296 OG609_RS10190 WP_093898912.1 2417771..2418565(+) (dinR/lexA) [Streptomyces sp. NBC_01224]
MTTTADSATITAQDRSQSRLEPVHAMNDSVTNTEGPEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=662296 OG609_RS10190 WP_093898912.1 2417771..2418565(+) (dinR/lexA) [Streptomyces sp. NBC_01224]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCAGAGCCCGTGCGCCCGGCGCGCTCGTTGCCCGGCCGACCTCCAGGTATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGTGGCTACCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGTTTCCTGCGTCGCGACCCACATCGCCCGCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCTCGCAGCCCA
CCGATACAACGGGAAAGCCCGCGGCGTCGTATGTGCCGCTGGTCGGCCGGATCGCAGCCGGTGGCCCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGTGACGGAGAGCTGTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACTGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCGGGCGACGAAGCGACAATTCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375