Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG609_RS07415 Genome accession   NZ_CP108529
Coordinates   1788062..1788694 (+) Length   210 a.a.
NCBI ID   WP_327272055.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01224     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783062..1793694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG609_RS07395 (OG609_07445) - 1784132..1784932 (+) 801 WP_327272051.1 IclR family transcriptional regulator -
  OG609_RS07400 (OG609_07450) - 1784966..1785646 (-) 681 WP_327272052.1 ABC transporter ATP-binding protein -
  OG609_RS07405 (OG609_07455) - 1785643..1786737 (-) 1095 WP_327272053.1 FtsX-like permease family protein -
  OG609_RS07410 (OG609_07460) - 1786848..1788065 (+) 1218 WP_327272054.1 sensor histidine kinase -
  OG609_RS07415 (OG609_07465) vraR 1788062..1788694 (+) 633 WP_327272055.1 response regulator transcription factor Regulator
  OG609_RS07420 (OG609_07470) - 1788711..1789025 (-) 315 WP_327272056.1 DUF5955 family protein -
  OG609_RS07425 (OG609_07475) - 1789263..1789868 (+) 606 WP_327272057.1 nucleotidyltransferase family protein -
  OG609_RS07430 (OG609_07480) aceB 1790104..1791723 (+) 1620 WP_327272058.1 malate synthase A -
  OG609_RS07435 (OG609_07485) - 1792236..1793426 (-) 1191 WP_327272059.1 hypothetical protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22030.44 Da        Isoelectric Point: 7.4233

>NTDB_id=662291 OG609_RS07415 WP_327272055.1 1788062..1788694(+) (vraR) [Streptomyces sp. NBC_01224]
MTTPIRLLLADDHPVVRAGLRAVLDAESDFCVVAEAATAERAVALAATGEFDVVLMDLQFGAGMHGSRATAAITAQAGAP
RVLILTTYDSDADILAAVEAGAAGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAEALTKRELEVLQLVG
EGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLIRR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=662291 OG609_RS07415 WP_327272055.1 1788062..1788694(+) (vraR) [Streptomyces sp. NBC_01224]
ATGACCACCCCCATCAGGCTGCTGCTCGCCGACGACCACCCGGTCGTACGGGCGGGGCTGCGGGCCGTGCTCGACGCCGA
ATCCGACTTCTGTGTGGTCGCCGAGGCGGCGACCGCCGAACGGGCCGTCGCGCTCGCCGCGACCGGCGAGTTCGACGTCG
TCCTCATGGACCTGCAGTTCGGTGCGGGCATGCACGGTTCCCGGGCTACTGCGGCCATCACGGCACAGGCGGGCGCGCCC
CGGGTCCTGATCCTCACCACGTACGACTCGGACGCCGACATCCTGGCCGCGGTCGAGGCGGGCGCCGCCGGCTATCTACT
GAAGGACGCCCCGCCGGAGGAACTGGCGGCGGCGGTACGCACGGCGGCGGCCGGCCGGTCGGCACTCGCTCCGGCCGTCG
CCCACCGTCTGATGGACCGCATGCGGACTCCGGCCGAGGCCCTGACCAAGCGCGAACTGGAAGTGCTGCAGCTGGTCGGC
GAGGGCCTGTCGAACCTGCAGATCAGCAAGCGGCTCTTCCTCAGCCAAGCGACCGTGAAGTCCCATCTGGTGCACATCTA
CGCCAAGCTGGGCGTGGACTCCCGCACCTCGGCGGTCGCGGCGGCGACGGCCCGTCGGCTGATCCGCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(147-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.019

99.048

0.367