Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG763_RS21640 Genome accession   NZ_CP108522
Coordinates   4760574..4761200 (+) Length   208 a.a.
NCBI ID   WP_030933144.1    Uniprot ID   A0ABV2UIY3
Organism   Streptomyces sp. NBC_01230     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4755574..4766200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG763_RS21620 (OG763_21655) - 4756401..4757792 (-) 1392 WP_327425152.1 M1 family metallopeptidase -
  OG763_RS21625 (OG763_21660) - 4757855..4758457 (-) 603 WP_030933135.1 ankyrin repeat domain-containing protein -
  OG763_RS21630 (OG763_21665) - 4758484..4759041 (-) 558 WP_327422537.1 heme-binding protein -
  OG763_RS21635 (OG763_21670) - 4759228..4760577 (+) 1350 WP_327422538.1 sensor histidine kinase -
  OG763_RS21640 (OG763_21675) vraR 4760574..4761200 (+) 627 WP_030933144.1 response regulator transcription factor Regulator
  OG763_RS21645 (OG763_21680) - 4761347..4761844 (+) 498 WP_030933146.1 hypothetical protein -
  OG763_RS21650 (OG763_21685) - 4761872..4762573 (-) 702 WP_327422539.1 pentapeptide repeat-containing protein -
  OG763_RS21655 (OG763_21690) - 4762675..4763874 (+) 1200 WP_327422540.1 NAD(P)-binding protein -
  OG763_RS21660 (OG763_21695) - 4763921..4764922 (+) 1002 WP_327422541.1 zinc-binding dehydrogenase -
  OG763_RS21665 (OG763_21700) - 4764940..4765413 (-) 474 WP_030933154.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22096.43 Da        Isoelectric Point: 5.1031

>NTDB_id=662235 OG763_RS21640 WP_030933144.1 4760574..4761200(+) (vraR) [Streptomyces sp. NBC_01230]
MTPPAVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVVLAARLTPDVVLMDLQLGEGIDGVEATRRIAVTGVH
VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRSPLPTLTDRERDILGQLSQ
GLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 627 bp        

>NTDB_id=662235 OG763_RS21640 WP_030933144.1 4760574..4761200(+) (vraR) [Streptomyces sp. NBC_01230]
ATGACCCCGCCCGCCGTACGGATCCTGCTCTGCGACGACCACGCCGTCGTACGCGCCGGACTGCTCGCCCTTCTGGGCAG
CGAACCGGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCCGTCGTCCTGGCCGCCCGGCTGACCCCGGACG
TCGTCCTGATGGACCTCCAACTGGGCGAAGGGATCGACGGAGTCGAAGCCACCCGTCGCATCGCGGTCACCGGCGTCCAT
GTCCTCGTCCTCACGACGTACGACACGGACGCCGACATCACCCGCGCCATCGAAGCGGGCGCCACCGGCTATCTGCTGAA
GGCCGAACGCCCGGAGGAACTCTTCGCCGCGATCCGCTCGGCGGCCCAGGGCCGCACCACGCTCTCGCCACCGGTTGCCA
GCCGTGTCATGGCCCGGATGCGCAGCCCCCTGCCGACGCTCACGGACCGCGAACGCGACATCCTGGGCCAGCTGTCCCAG
GGCCTGGGCAACCGGGACATCGCCCGGGCCCTGTTCATCAGCGAGGCCACGGTCAAGACGCACCTGGGCCGCATCTACGA
CAAACTCGGCGTCGACACCCGCGCAGGCGCCGTGTCCGTGGCGAAGGAGCAGCGACTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.13

99.519

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

35.78

100

0.375