Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AS19_RS11165 Genome accession   NZ_AP014613
Coordinates   2471982..2473349 (-) Length   455 a.a.
NCBI ID   WP_035458870.1    Uniprot ID   A0AAD1B4S2
Organism   Alcanivorax sp. NBRC 101098     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2466982..2478349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS19_RS11150 (AS19_22360) - 2467643..2468683 (+) 1041 WP_011589460.1 methyltransferase domain-containing protein -
  AS19_RS11155 (AS19_22370) - 2468775..2470919 (+) 2145 WP_011589461.1 FAD-dependent oxidoreductase -
  AS19_RS11160 (AS19_22380) - 2470991..2471773 (+) 783 WP_011589462.1 DUF547 domain-containing protein -
  AS19_RS11165 (AS19_22390) radA 2471982..2473349 (-) 1368 WP_035458870.1 DNA repair protein RadA Machinery gene
  AS19_RS11170 (AS19_22400) alr 2473623..2474684 (-) 1062 WP_011589464.1 alanine racemase -
  AS19_RS11175 (AS19_22410) dnaB 2474775..2476169 (-) 1395 WP_011589465.1 replicative DNA helicase -
  AS19_RS11180 (AS19_22420) rplI 2476422..2476874 (-) 453 WP_011589466.1 50S ribosomal protein L9 -
  AS19_RS11185 (AS19_22430) rpsR 2476890..2477120 (-) 231 WP_007148676.1 30S ribosomal protein S18 -
  AS19_RS11190 (AS19_22440) priB 2477143..2477451 (-) 309 WP_011589467.1 primosomal replication protein N -
  AS19_RS11195 (AS19_22450) rpsF 2477454..2477795 (-) 342 WP_011589468.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48733.38 Da        Isoelectric Point: 6.8837

>NTDB_id=66217 AS19_RS11165 WP_035458870.1 2471982..2473349(-) (radA) [Alcanivorax sp. NBRC 101098]
MAKKKIAFVCTDCGADFPKWQGQCPACNAWNTLQEFVHDPATPSSKGAGSRGGFSGQLSEVQNLNDIVLEETPRISSGMG
ELDRVLGGGLVPGSAILIGGHPGAGKSTLLLQTLCRLSDSQSCLYITGEESLSQVAMRADRLKLPKEKLRLAAETDVEQI
LELARKEMPKVLVVDSIQVMFLAALQSAPGSVAQVRECAAALTRFAKQTGTVLLLVGHVTKDGTLAGPKVLEHMIDCSLM
LEGSTDSRFRTLRGLKNRFGAVNELGVFAMTGEGLKEVKNPSAIFLNRAEEIASGSLVTVVWEGTRPLLVELQALVDASH
FGNPRRICVGLEGNRLAMLLAVLHRHGGIQVGDQDVFMNVVGGVKVTETAADLAQLLAIVSSFRDRALERELVVFGEVGL
SGEIRPVPQGQERLYEAVKHGFKKAIVPKANLPRKLPDGVDIIGVSNVAEALEYL

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=66217 AS19_RS11165 WP_035458870.1 2471982..2473349(-) (radA) [Alcanivorax sp. NBRC 101098]
GTGGCCAAGAAAAAGATCGCGTTTGTATGCACGGATTGCGGAGCGGATTTTCCCAAATGGCAGGGTCAGTGTCCGGCCTG
TAATGCCTGGAATACCTTGCAAGAGTTTGTCCACGATCCTGCTACCCCATCATCAAAAGGGGCGGGCAGCCGGGGCGGCT
TTTCCGGCCAGCTGTCAGAAGTGCAAAATCTCAATGATATTGTGCTCGAAGAAACCCCGCGTATCAGTTCCGGCATGGGC
GAGCTGGATCGAGTGCTGGGTGGCGGGTTGGTGCCTGGTTCGGCCATTCTGATTGGTGGGCACCCCGGTGCGGGGAAATC
TACCTTGCTACTACAAACGCTGTGTAGGCTCTCTGACTCCCAAAGCTGTTTGTATATCACCGGCGAAGAATCCTTGTCGC
AAGTGGCTATGCGTGCTGACCGCCTGAAGCTACCCAAGGAAAAACTGCGACTGGCGGCGGAGACTGACGTGGAGCAGATT
CTCGAATTGGCCCGCAAGGAGATGCCGAAGGTGTTGGTGGTGGATTCTATCCAGGTCATGTTTCTGGCGGCGTTGCAGTC
GGCGCCGGGCAGTGTGGCTCAGGTTCGTGAATGTGCTGCCGCTCTGACTCGCTTTGCCAAGCAGACGGGAACAGTGCTGC
TGCTGGTGGGCCATGTAACCAAGGATGGCACCCTGGCGGGGCCGAAGGTATTGGAGCACATGATTGATTGTTCCCTGATG
CTGGAAGGATCTACGGATTCGCGCTTTCGTACCCTGCGTGGCCTCAAGAATCGTTTTGGGGCGGTGAACGAGCTGGGCGT
ATTTGCCATGACCGGCGAGGGGCTGAAGGAAGTAAAAAATCCTTCCGCCATTTTCCTTAACCGGGCCGAGGAGATCGCTT
CCGGTTCTCTGGTAACGGTGGTCTGGGAAGGAACCCGTCCGCTGCTGGTGGAGCTGCAGGCACTGGTGGACGCCTCCCAC
TTCGGTAACCCTCGGCGTATCTGTGTGGGGTTGGAGGGGAATCGGTTGGCCATGTTGCTGGCGGTACTGCATCGCCATGG
TGGCATTCAGGTAGGCGATCAGGATGTGTTCATGAATGTGGTGGGTGGTGTGAAGGTTACCGAAACGGCTGCAGACTTGG
CCCAATTGCTGGCTATTGTGTCCAGCTTCCGTGACCGGGCGCTGGAGCGCGAGCTGGTGGTGTTTGGTGAGGTGGGCTTG
TCCGGGGAAATTCGGCCGGTTCCTCAAGGGCAGGAACGGCTTTATGAAGCAGTAAAACACGGCTTTAAAAAAGCCATTGT
GCCGAAAGCCAACTTGCCTAGAAAGCTGCCAGACGGGGTGGACATTATTGGCGTTAGTAACGTGGCTGAGGCGCTGGAAT
ATCTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

43.612

99.78

0.435
  radA Streptococcus pneumoniae D39

43.612

99.78

0.435
  radA Streptococcus pneumoniae R6

43.612

99.78

0.435
  radA Streptococcus pneumoniae TIGR4

43.612

99.78

0.435
  radA Streptococcus mitis NCTC 12261

43.392

99.78

0.433
  radA Streptococcus mitis SK321

43.392

99.78

0.433

Multiple sequence alignment