Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   MNU35_RS04765 Genome accession   NZ_CP093170
Coordinates   1010227..1011273 (+) Length   348 a.a.
NCBI ID   WP_002447441.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain TMDU-128     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1005227..1016273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNU35_RS04740 (MNU35_04745) - 1006367..1006903 (+) 537 WP_002447446.1 hypothetical protein -
  MNU35_RS04745 (MNU35_04750) - 1007055..1008041 (-) 987 WP_002447445.1 aromatic acid exporter family protein -
  MNU35_RS04750 (MNU35_04755) map 1008215..1008970 (+) 756 WP_002447444.1 type I methionyl aminopeptidase -
  MNU35_RS04755 (MNU35_04760) - 1009128..1009514 (+) 387 WP_002495657.1 hypothetical protein -
  MNU35_RS04760 (MNU35_04765) liaF 1009529..1010230 (+) 702 WP_002447442.1 cell wall-active antibiotics response protein LiaF -
  MNU35_RS04765 (MNU35_04770) vraS 1010227..1011273 (+) 1047 WP_002447441.1 sensor histidine kinase Regulator
  MNU35_RS04770 (MNU35_04775) vraR 1011263..1011892 (+) 630 WP_002473914.1 two-component system response regulator VraR Regulator
  MNU35_RS04775 (MNU35_04780) - 1011949..1013127 (-) 1179 WP_002487362.1 YihY/virulence factor BrkB family protein -
  MNU35_RS04780 (MNU35_04785) - 1013533..1013817 (-) 285 WP_002447438.1 YtxH domain-containing protein -
  MNU35_RS04785 (MNU35_04790) - 1013825..1014289 (-) 465 WP_001830437.1 low molecular weight protein-tyrosine-phosphatase -
  MNU35_RS04790 (MNU35_04795) - 1014431..1014646 (+) 216 WP_001830421.1 DUF1128 domain-containing protein -
  MNU35_RS04795 (MNU35_04800) - 1014648..1015889 (+) 1242 WP_254106354.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40114.53 Da        Isoelectric Point: 5.8512

>NTDB_id=662101 MNU35_RS04765 WP_002447441.1 1010227..1011273(+) (vraS) [Staphylococcus epidermidis strain TMDU-128]
MNHYIRAIGSMLILVYSMLIAFLFIDKVFVNIIFFQGMFYTQIFGIPVFLFLNLLIVFLCIIVGSVLAYKINQQNDWIIS
QIERSIEGQTVGINDQNIELYTETIDIYHTLVPLNQELHRLRMKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLNQQIPILEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVLHEI
QDFEVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNQEDYLLLRIQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEENSSGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=662101 MNU35_RS04765 WP_002447441.1 1010227..1011273(+) (vraS) [Staphylococcus epidermidis strain TMDU-128]
ATGAATCACTACATAAGAGCTATAGGCTCAATGCTTATATTAGTATATAGTATGCTTATTGCTTTTTTATTTATTGATAA
AGTGTTTGTAAATATTATCTTTTTTCAAGGGATGTTTTATACACAAATATTTGGAATACCTGTTTTTCTATTTTTAAATT
TATTAATTGTTTTTTTATGTATTATAGTTGGATCTGTTTTAGCTTATAAAATTAATCAACAAAATGATTGGATTATTTCC
CAAATAGAAAGATCAATAGAAGGACAAACAGTAGGTATCAATGATCAAAATATCGAATTATATACAGAAACGATAGATAT
TTATCATACACTAGTTCCATTAAATCAAGAATTACATCGACTTAGAATGAAGACTCAGAATTTAACTAATGAAAACTACA
ATATTAATGATGTAAAAGTCAAAAAGATTATCGAAGATGAGCGACAACGACTTGCAAGGGAATTGCATGATTCTGTTAGC
CAACAATTATTTGCTGCGAGCATGATGCTATCGGCAATAAAAGAGTCGAAATTAGAACCACCTTTAAATCAACAGATACC
AATTCTTGAAAAAATGGTTCAAGACTCACAACTTGAAATGAGAGCTTTGTTGTTACATTTAAGACCGATAGGTTTAAAAG
ATAAGTCTCTAGGTGAAGGTATTAAAGATTTAGTCATCGATTTACAAAAGAAAGTACCAATGAAAGTTTTGCATGAAATT
CAAGATTTTGAAGTGCCAAAAGGTATTGAAGATCATTTGTTCAGAATTACACAAGAAGCTATTTCAAATACATTGAGACA
TTCAAATGGTACGAAAGTAACTGTGGAATTATTTAATCAAGAGGATTATCTTTTACTAAGAATTCAAGATAATGGAAAAG
GATTTAATGTAGATGAAAAATTTGAACAAAGTTATGGTTTAAAAAATATGCGAGAACGAGCGTTAGAAATTGGTGCGACG
TTTCATATTGTATCTTTACCTGATTCAGGTACACGAATTGAAGTTAAGGCACCATTGAATAAGGAGGAGAACTCAAGTGG
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

92.442

98.851

0.914