Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG332_RS32595 Genome accession   NZ_CP108514
Coordinates   6846209..6847003 (-) Length   264 a.a.
NCBI ID   WP_030709636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01233     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6841209..6852003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG332_RS32580 (OG332_32550) - 6841362..6842060 (+) 699 WP_327416795.1 GNAT family N-acetyltransferase -
  OG332_RS32585 (OG332_32555) - 6842201..6844051 (+) 1851 WP_327419453.1 IucA/IucC family siderophore biosynthesis protein -
  OG332_RS32590 (OG332_32560) - 6844104..6846074 (+) 1971 WP_327416796.1 ATP-dependent DNA helicase -
  OG332_RS32595 (OG332_32565) dinR/lexA 6846209..6847003 (-) 795 WP_030709636.1 transcriptional repressor LexA Regulator
  OG332_RS32600 (OG332_32570) nrdR 6847500..6848012 (+) 513 WP_327416797.1 transcriptional regulator NrdR -
  OG332_RS32605 (OG332_32575) - 6848184..6851072 (+) 2889 WP_327416798.1 vitamin B12-dependent ribonucleotide reductase -
  OG332_RS32610 (OG332_32580) - 6851181..6851576 (-) 396 WP_327416799.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28602.40 Da        Isoelectric Point: 7.4238

>NTDB_id=662098 OG332_RS32595 WP_030709636.1 6846209..6847003(-) (dinR/lexA) [Streptomyces sp. NBC_01233]
MTTTADSATITAQNRSQSRLEPVHAMNDANLNPDAEPVVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=662098 OG332_RS32595 WP_030709636.1 6846209..6847003(-) (dinR/lexA) [Streptomyces sp. NBC_01233]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGATGCGGAGCCCGTAGTACGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCG
CCGACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGTCGGGGTTACCCG
CCGTCCATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGTACCTCGTCGGTCGCCCACCAGCTGATGGCCCTCGAGCG
GAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGCGCCTACGAGGTACGCGGCTCCGACCAGCCCAGCTCGCAGCCCA
CCGACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TCGCCGCGATGCTCGACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATCCCCGGCGATGACGCGACCATCCTCGGCAAGGTCGTTGCAGTGCTGCGTCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375