Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG332_RS14750 Genome accession   NZ_CP108514
Coordinates   3137276..3139198 (+) Length   640 a.a.
NCBI ID   WP_327413914.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3132276..3144198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG332_RS14735 (OG332_14730) - 3132554..3134005 (+) 1452 WP_327413912.1 FGGY family carbohydrate kinase -
  OG332_RS14740 (OG332_14735) - 3134148..3135311 (-) 1164 WP_327419062.1 IS701 family transposase -
  OG332_RS14745 (OG332_14740) rcrP 3135546..3137279 (+) 1734 WP_327413913.1 ABC transporter ATP-binding protein Regulator
  OG332_RS14750 (OG332_14745) rcrQ 3137276..3139198 (+) 1923 WP_327413914.1 ABC transporter ATP-binding protein Regulator
  OG332_RS14755 (OG332_14750) rpoS 3139268..3140299 (-) 1032 WP_327419226.1 RNA polymerase sigma factor Regulator
  OG332_RS14760 (OG332_14755) - 3140494..3141075 (+) 582 WP_327413915.1 hypothetical protein -
  OG332_RS14765 (OG332_14760) - 3141072..3142055 (+) 984 WP_327413916.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG332_RS14770 (OG332_14765) - 3142052..3143032 (+) 981 WP_327413917.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68603.93 Da        Isoelectric Point: 5.1869

>NTDB_id=662053 OG332_RS14750 WP_327413914.1 3137276..3139198(+) (rcrQ) [Streptomyces sp. NBC_01233]
MSGPGGRMMTGPAARSMDFKGSGKRLLGQIAHDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGTTK
QQALDGLRARGQDGMADMLSGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALLTVPLSVFVAAKIGKKS
QPQFVAQWKTTGALGAHVEEMYSGHSLVKVFGRQKESAAVFTEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDASEQDADAEVPERPEELRGQVTFDKV
AFRYEPDKPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRAGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEVEGAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASDGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=662053 OG332_RS14750 WP_327413914.1 3137276..3139198(+) (rcrQ) [Streptomyces sp. NBC_01233]
ATGAGCGGGCCCGGAGGACGGATGATGACGGGACCGGCCGCGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCTGCT
GGGCCAGATCGCGCACGACCGCGCCAAGATCTGGGGCATGGTCGCGGCCGTGGTCGGCAGCGTCGGCTGCGCGGTGGTCG
GCCCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCCGGGATCGTGGGCCGGGAGATGCCGGCCGGCACCACGAAG
CAGCAGGCCCTGGACGGGCTGCGCGCCAGGGGCCAGGACGGCATGGCGGACATGCTCTCCGGCACCGACTTCACTCCCGG
GCAGGGCATCGACTTCGGCGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTGGCCGGCCTGCTGATGC
TGGTCGCGACCCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGACTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATCGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGTCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTCGCCATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCACTGCTGACCGTGCCGCTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACGACCGGTGCGCTGGGCGCCCACGTCGAGGAGATGTACTCGGGGCACAGCCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCACCGAGCAGAACGAGGCCCTCTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCCAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTCTACGAGCTGCTGG
ACGCGTCGGAGCAGGACGCGGACGCCGAGGTTCCGGAGCGTCCGGAGGAGCTCCGCGGCCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGTCGGTCGAGCCGGGTCACACCGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACGACGCTCGTGAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACGCGCGAGGAACTGCGCGCCGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCCTCGCGGGAGGTCACGCGCGCCGAGGTCGAGGGGGCGGCGCG
GGCCGCGCACGCGGACCGTTTCATCCGCACCCTGCCGGACGGCTACGACACCGTCCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGTCGGACGGTGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGTCGAGGTCGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.097

97.031

0.389