Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG332_RS14745 Genome accession   NZ_CP108514
Coordinates   3135546..3137279 (+) Length   577 a.a.
NCBI ID   WP_327413913.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130546..3142279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG332_RS14730 (OG332_14725) - 3132156..3132455 (+) 300 WP_327413911.1 YtxH domain-containing protein -
  OG332_RS14735 (OG332_14730) - 3132554..3134005 (+) 1452 WP_327413912.1 FGGY family carbohydrate kinase -
  OG332_RS14740 (OG332_14735) - 3134148..3135311 (-) 1164 WP_327419062.1 IS701 family transposase -
  OG332_RS14745 (OG332_14740) rcrP 3135546..3137279 (+) 1734 WP_327413913.1 ABC transporter ATP-binding protein Regulator
  OG332_RS14750 (OG332_14745) rcrQ 3137276..3139198 (+) 1923 WP_327413914.1 ABC transporter ATP-binding protein Regulator
  OG332_RS14755 (OG332_14750) rpoS 3139268..3140299 (-) 1032 WP_327419226.1 RNA polymerase sigma factor Regulator
  OG332_RS14760 (OG332_14755) - 3140494..3141075 (+) 582 WP_327413915.1 hypothetical protein -
  OG332_RS14765 (OG332_14760) - 3141072..3142055 (+) 984 WP_327413916.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62617.52 Da        Isoelectric Point: 5.0739

>NTDB_id=662052 OG332_RS14745 WP_327413913.1 3135546..3137279(+) (rcrP) [Streptomyces sp. NBC_01233]
MLIRLLRTHLGAYRKPIAVLVLLQLLQTSASLYLPTLNADIIDKGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVRLSGV
LLAVVPVLGISVGAIVFKTRPLFRQMQDRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLASGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIIMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PADPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLAQTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=662052 OG332_RS14745 WP_327413913.1 3135546..3137279(+) (rcrP) [Streptomyces sp. NBC_01233]
GTGCTCATACGACTTCTGCGCACCCATCTGGGTGCGTACCGGAAACCGATCGCGGTGCTGGTCCTGCTGCAGCTGCTGCA
GACCAGCGCCAGCCTTTACCTGCCCACACTGAACGCCGACATCATCGACAAGGGTGTCGTCAACGGCGACACCGGCTACA
TCCTCCGCTTCGGCGCCCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGAGCCGTCTACTACGGCGCC
CGTACGGCGGCGGCCTTCGGCCGGGACGTCCGCGCGGCCGTCTTCGACCGCGTGCAGAGCTTCTCCGCCCGGGAGCTCGG
CCAGTTCGGTGCCCCGTCCCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCCTGATGGTCTCGGCCCCGATCATGTGCGTAGGCGGCATCGCCATGGCGCTCTCTCTGGACGTGCGGCTGTCGGGCGTC
CTGCTCGCCGTGGTCCCGGTGCTCGGGATCTCGGTCGGTGCCATCGTCTTCAAGACGCGGCCGCTGTTCCGCCAGATGCA
GGACCGCCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGTTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGCTGGCCTCCGGCAAGCTCCTGGCGTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTGGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCATCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTGCCG
CCCGCCGACCCGGTGCGCGAACTCGCCCGCCGCGGGCGCCTGGAGCTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACGCTGCTGGGCCTGGTCCCGCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTGGTCGACGGGGAGGACGTACGC
CGGCTCGACCCGGAGCTGCTGGCCCAGACGGTCGGCATGGTTCCGCAGAAGCCGTACCTGTTCTCCGGAACCATCGCCTC
CAACCTGCGCTACGGGCGCCCGGACGCGAGTGACGAAGAGCTGTGGCAGGCGCTGGAAGTGGCGCAGGCCAAGGAGTTCG
TGTCCGCGCTGGAGGGTGGCCTGGAGGCCCCCGTCACCCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCTCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTGGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.497

97.574

0.395