Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKP10_RS04545 Genome accession   NZ_CP093164
Coordinates   934249..935610 (-) Length   453 a.a.
NCBI ID   WP_046163898.1    Uniprot ID   A0A365PST2
Organism   Stutzerimonas zhaodongensis strain LQ01-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 929249..940610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKP10_RS04520 (MKP10_04520) glyA 929796..931049 (+) 1254 WP_046163902.1 serine hydroxymethyltransferase -
  MKP10_RS04525 (MKP10_04525) - 931223..932575 (+) 1353 WP_241530230.1 cache domain-containing protein -
  MKP10_RS04530 (MKP10_04530) - 932610..933248 (+) 639 WP_046163900.1 response regulator -
  MKP10_RS04535 (MKP10_04535) - 933349..933810 (+) 462 WP_241530231.1 methyltransferase family protein -
  MKP10_RS04540 (MKP10_04540) - 933869..934240 (+) 372 WP_241530232.1 PilZ domain-containing protein -
  MKP10_RS04545 (MKP10_04545) radA 934249..935610 (-) 1362 WP_046163898.1 DNA repair protein RadA Machinery gene
  MKP10_RS04550 (MKP10_04550) - 935726..936160 (+) 435 WP_241530233.1 CopD family protein -
  MKP10_RS04555 (MKP10_04555) - 936317..936586 (-) 270 WP_045430358.1 YdcH family protein -
  MKP10_RS04560 (MKP10_04560) mscL 936798..937208 (+) 411 WP_045430356.1 large-conductance mechanosensitive channel protein MscL -
  MKP10_RS04565 (MKP10_04565) - 937257..939293 (-) 2037 WP_241530234.1 nitric oxide reductase activation protein NorD -
  MKP10_RS04570 (MKP10_04570) - 939371..940186 (-) 816 WP_241530235.1 CbbQ/NirQ/NorQ/GpvN family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48554.06 Da        Isoelectric Point: 6.7492

>NTDB_id=662029 MKP10_RS04545 WP_046163898.1 934249..935610(-) (radA) [Stutzerimonas zhaodongensis strain LQ01-5]
MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETIIDGAAPPSGRAGWAGEQANIRTLAEVSVEEVPRFSTASGELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIARQFPALYVTGEESQQQVAMRARRLDLPQDRLKVMTETCIETIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSVVMATWEGTRPMLVEVQALVDTSHMANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFINVVGGVKVLETASDLALMAAVISSLRNRPLDTDLLVFGEVGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=662029 MKP10_RS04545 WP_046163898.1 934249..935610(-) (radA) [Stutzerimonas zhaodongensis strain LQ01-5]
ATGGCCAAGGCCAAGCGCATGTATGGCTGTACCGAATGCGGCTCGACCTTTCCCAAATGGGCCGGTCAATGTGGTGACTG
CGGCGCCTGGAACACGCTGGTGGAGACCATTATCGATGGCGCAGCCCCACCATCGGGCCGCGCAGGCTGGGCTGGGGAGC
AAGCCAACATCCGAACGCTGGCCGAAGTCAGCGTCGAGGAAGTACCACGTTTCTCCACCGCCTCCGGTGAGCTGGACCGC
GTGCTCGGCGGTGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGATCCTGGCATCGGCAAGTCGACCATCCTGCT
ACAGACCCTCTGCAACATAGCCCGCCAGTTCCCGGCCCTTTACGTGACCGGCGAAGAATCACAGCAGCAGGTCGCCATGC
GCGCACGACGCCTCGATCTGCCGCAGGACCGGCTCAAAGTGATGACCGAAACCTGCATCGAAACCATCATCGCCACTGCA
CGCTTGGAAAAGCCTAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACGGAGCAGTTGCAGTCCGCCCCCGGCGG
CGTCGCTCAGGTCCGTGAAAGCGCCGCGCTGCTGGTGCGCTTCGCCAAGCAGAGTGGTACGGCGATCTTCCTGGTCGGCC
ATGTCACCAAGGAAGGTGCGCTGGCCGGCCCGCGCGTGCTCGAGCACATGGTCGACACAGTGCTCTACTTTGAGGGCGAA
TCGGATGGGCGTCTGCGCCTGCTCCGTGCGGTGAAGAACCGTTTCGGCGCGATCAACGAACTGGGCGTGTTCGGCATGAC
CGATAAAGGCCTCAAGGAAGTCACCAACCCTTCGGCGATCTTCCTCACCCGCGCTCAGGAAGCGGTGCCCGGCAGCGTCG
TAATGGCCACCTGGGAAGGCACCCGCCCCATGCTGGTCGAGGTACAGGCCTTGGTCGATACCAGCCACATGGCCAATCCG
CGCCGCGTCACCCTTGGCCTCGACCAGAACCGCCTGGCCATGCTGCTGGCCGTCCTGCATCGCCACGGCGGCATTCCGAC
CTACGACCAGGACGTGTTCATCAACGTGGTCGGCGGCGTGAAGGTGCTAGAGACGGCCTCAGACCTGGCGCTGATGGCAG
CGGTGATATCCAGCTTGCGCAACCGCCCGCTGGATACCGACTTGTTGGTGTTTGGCGAGGTCGGTCTGTCCGGGGAGATC
CGTCCGGTGCCGAGCGGCCAGGAGCGACTGAAGGAAGCCGCGAAGCATGGTTTCAAGCGCGCCATTGTGCCCAAGGGCAA
CGCACCGAAGGAGGCGCCGGCCGGGCTACAAGTAATTGCCGTAACGCGGCTTGAGCAGGCCCTGGACGCGCTATTCGAGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-219)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365PST2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.344

100

0.483
  radA Streptococcus pneumoniae Rx1

46.389

100

0.468
  radA Streptococcus pneumoniae D39

46.389

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.389

100

0.468
  radA Streptococcus pneumoniae R6

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466
  radA Streptococcus mitis SK321

46.358

100

0.464