Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG289_RS21920 Genome accession   NZ_CP108513
Coordinates   4962948..4963946 (-) Length   332 a.a.
NCBI ID   WP_327315732.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01235     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4957948..4968946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG289_RS21905 (OG289_21930) - 4958304..4959875 (-) 1572 WP_327315730.1 MFS transporter -
  OG289_RS21910 (OG289_21935) - 4959938..4960921 (+) 984 WP_327315731.1 YafY family protein -
  OG289_RS21915 (OG289_21940) - 4961288..4961902 (-) 615 Protein_4344 TetR family transcriptional regulator -
  OG289_RS21920 (OG289_21945) rpoS 4962948..4963946 (-) 999 WP_327315732.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG289_RS21925 (OG289_21950) - 4964154..4964693 (+) 540 WP_327315733.1 N-acetyltransferase family protein -
  OG289_RS21930 (OG289_21955) - 4964717..4965526 (-) 810 WP_327315734.1 class III extradiol ring-cleavage dioxygenase -
  OG289_RS21935 (OG289_21960) - 4965693..4966199 (+) 507 WP_327315735.1 MarR family transcriptional regulator -
  OG289_RS21940 (OG289_21965) - 4966234..4967772 (-) 1539 WP_327315736.1 MFS transporter -
  OG289_RS21945 (OG289_21970) - 4967928..4968578 (-) 651 WP_327315737.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37155.83 Da        Isoelectric Point: 4.9004

>NTDB_id=661985 OG289_RS21920 WP_327315732.1 4962948..4963946(-) (rpoS) [Streptomyces sp. NBC_01235]
MATRAVARRKSATGGTTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGEEESKAD
ASREELEALVADSERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIATELGSTPERVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDGLIDRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALMELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=661985 OG289_RS21920 WP_327315732.1 4962948..4963946(-) (rpoS) [Streptomyces sp. NBC_01235]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCACCGGCGGGACGACCGACGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGTTGTCCCAGATCATCGAGGCGGGCGTCTTCGCGCAGCAGGTCCTCGACGGCGAGGAGGAGTCCAAGGCGGAC
GCCTCCCGTGAGGAGCTCGAGGCTCTGGTCGCCGACAGCGAGCGGGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTCGCGGTCGCCCGCCGCTACCCCCGCAGCGGTCTCCCCCTCCTCGACCTCATCCAGGAGGGCAACGCCGGTCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCGATAGCGGACCAGTCGCGCACGATCCGCCTGCCCGTCCACCTCGTGGAGGAGCTCGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGGGAGAACGGCCGCGACCCGGAGCCCGCCGAGATCGCGACCGAGCTCGGCTCCACGCCGGAGC
GCGTCACGGACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCCGTCGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCCGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGG
CTTGATCGACCGCCTCGACCCGCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACCGAGGTCGGCAAGGAACACGGCCTGACGAGGGAACGCATCCGCCAGATCGAGAAGCACGCCCTCATGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGAGGCAGCAGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364