Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MMZ59_RS11290 Genome accession   NZ_CP093150
Coordinates   2223935..2225005 (-) Length   356 a.a.
NCBI ID   WP_017357987.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JYY-02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218935..2230005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ59_RS11240 (MMZ59_11240) sipW 2219025..2219597 (-) 573 WP_241511277.1 signal peptidase I SipW -
  MMZ59_RS11245 (MMZ59_11245) tapA 2219647..2220174 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  MMZ59_RS11250 (MMZ59_11250) - 2220427..2220753 (+) 327 WP_241511278.1 DUF3889 domain-containing protein -
  MMZ59_RS11255 (MMZ59_11255) - 2220787..2220987 (-) 201 WP_046343970.1 YqzE family protein -
  MMZ59_RS11260 (MMZ59_11260) - 2221048..2221431 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  MMZ59_RS11265 (MMZ59_11265) comGF 2221428..2221925 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  MMZ59_RS11270 (MMZ59_11270) comGE 2221867..2222181 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  MMZ59_RS11275 (MMZ59_11275) comGD 2222165..2222611 (-) 447 WP_025207620.1 competence type IV pilus minor pilin ComGD -
  MMZ59_RS11280 (MMZ59_11280) comGC 2222604..2222897 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  MMZ59_RS11285 (MMZ59_11285) comGB 2222914..2223954 (-) 1041 WP_025207621.1 competence type IV pilus assembly protein ComGB -
  MMZ59_RS11290 (MMZ59_11290) comGA 2223935..2225005 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  MMZ59_RS11295 (MMZ59_11295) - 2225463..2226335 (-) 873 WP_046527023.1 STAS domain-containing protein -
  MMZ59_RS11305 (MMZ59_11305) - 2226561..2226941 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MMZ59_RS11310 (MMZ59_11310) - 2227154..2227396 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  MMZ59_RS11315 (MMZ59_11315) - 2227445..2228083 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  MMZ59_RS11320 (MMZ59_11320) - 2228244..2228417 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  MMZ59_RS11325 (MMZ59_11325) - 2228442..2228756 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40339.70 Da        Isoelectric Point: 9.0449

>NTDB_id=661951 MMZ59_RS11290 WP_017357987.1 2223935..2225005(-) (comGA) [Bacillus altitudinis strain JYY-02]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=661951 MMZ59_RS11290 WP_017357987.1 2223935..2225005(-) (comGA) [Bacillus altitudinis strain JYY-02]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAGGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGGTCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCGACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTACAT
GCAAAAAATGCAAAAGGAGCTCTTTATCGAATGCTGGAATTTGGAGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGATGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.254

99.438

0.649