Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MMZ59_RS11230 Genome accession   NZ_CP093150
Coordinates   2217763..2218098 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JYY-02     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2212763..2223098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ59_RS11210 (MMZ59_11210) gcvT 2213239..2214336 (-) 1098 WP_057079317.1 glycine cleavage system aminomethyltransferase GcvT -
  MMZ59_RS11215 (MMZ59_11215) - 2214898..2216568 (+) 1671 WP_008342199.1 DEAD/DEAH box helicase -
  MMZ59_RS11220 (MMZ59_11220) - 2216583..2217380 (+) 798 WP_241511274.1 YqhG family protein -
  MMZ59_RS11225 (MMZ59_11225) - 2217565..2217729 (+) 165 WP_080934047.1 anti-repressor SinI family protein -
  MMZ59_RS11230 (MMZ59_11230) sinR 2217763..2218098 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  MMZ59_RS11235 (MMZ59_11235) tasA 2218166..2218966 (-) 801 WP_241511275.1 biofilm matrix protein TasA -
  MMZ59_RS11240 (MMZ59_11240) sipW 2219025..2219597 (-) 573 WP_241511277.1 signal peptidase I SipW -
  MMZ59_RS11245 (MMZ59_11245) tapA 2219647..2220174 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  MMZ59_RS11250 (MMZ59_11250) - 2220427..2220753 (+) 327 WP_241511278.1 DUF3889 domain-containing protein -
  MMZ59_RS11255 (MMZ59_11255) - 2220787..2220987 (-) 201 WP_046343970.1 YqzE family protein -
  MMZ59_RS11260 (MMZ59_11260) - 2221048..2221431 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  MMZ59_RS11265 (MMZ59_11265) comGF 2221428..2221925 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  MMZ59_RS11270 (MMZ59_11270) comGE 2221867..2222181 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  MMZ59_RS11275 (MMZ59_11275) comGD 2222165..2222611 (-) 447 WP_025207620.1 competence type IV pilus minor pilin ComGD -
  MMZ59_RS11280 (MMZ59_11280) comGC 2222604..2222897 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=661949 MMZ59_RS11230 WP_017357978.1 2217763..2218098(+) (sinR) [Bacillus altitudinis strain JYY-02]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=661949 MMZ59_RS11230 WP_017357978.1 2217763..2218098(+) (sinR) [Bacillus altitudinis strain JYY-02]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928