Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MMZ59_RS11045 Genome accession   NZ_CP093150
Coordinates   2185188..2186921 (-) Length   577 a.a.
NCBI ID   WP_008342224.1    Uniprot ID   A0AAU7FFR0
Organism   Bacillus altitudinis strain JYY-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180188..2191921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ59_RS11030 (MMZ59_11030) - 2181076..2182176 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  MMZ59_RS11035 (MMZ59_11035) spo0A 2182625..2183428 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  MMZ59_RS11040 (MMZ59_11040) spoIVB 2183712..2184989 (-) 1278 WP_113747198.1 SpoIVB peptidase -
  MMZ59_RS11045 (MMZ59_11045) recN 2185188..2186921 (-) 1734 WP_008342224.1 DNA repair protein RecN Machinery gene
  MMZ59_RS11050 (MMZ59_11050) ahrC 2186956..2187405 (-) 450 WP_007501163.1 transcriptional regulator AhrC/ArgR -
  MMZ59_RS11055 (MMZ59_11055) - 2187773..2188627 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  MMZ59_RS11060 (MMZ59_11060) dxs 2188624..2190525 (-) 1902 WP_048003502.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MMZ59_RS11065 (MMZ59_11065) - 2190677..2191573 (-) 897 WP_420914191.1 polyprenyl synthetase family protein -
  MMZ59_RS11070 (MMZ59_11070) - 2191557..2191817 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64585.49 Da        Isoelectric Point: 4.7444

>NTDB_id=661948 MMZ59_RS11045 WP_008342224.1 2185188..2186921(-) (recN) [Bacillus altitudinis strain JYY-02]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661948 MMZ59_RS11045 WP_008342224.1 2185188..2186921(-) (recN) [Bacillus altitudinis strain JYY-02]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGTGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCTCTTTGC
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAAGATGAAAATCATTTACATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGTTGTCTGAAAATGAACAGGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCACTTCAAAACGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGAAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGACTAAATGAGATGAAGCAGCTGAAGCGAAAATACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTTAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCATATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGAAAAAATGGCATAGATCA
AGCGCAATTTGTCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGT
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGTTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTCGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTAAGTGATGATGAAAAAGTGAGTGAAATCGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757